KEGG   Chenopodium quinoa (quinoa): 110736277
Entry
110736277         CDS       T05764                                 
Name
(RefSeq) DNA ligase 4-like
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
cqi  Chenopodium quinoa (quinoa)
Pathway
cqi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cqi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    110736277
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cqi03400]
    110736277
Enzymes [BR:cqi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     110736277
DNA repair and recombination proteins [BR:cqi03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     110736277
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 BRCT DNA_ligase_A_C RNA_ligase DNA_ligase_IV PTCB-BRCT XRCC4
Other DBs
NCBI-GeneID: 110736277
NCBI-ProteinID: XP_021772147
Position
Unknown
AA seq 1198 aa
MGENIKFYALVRLFHHISTSRTAQIKRTKFRRFLDSYCVKPTDYFPSIRLILPSLDRERG
SYGLKEASLALLLLDALAVSRDSEDAQKLINWRKGGSRIAGKYAGNFSMVAAEFLQRRQS
SVSGELTIREVNDLLDRLANADTRNAKVDVLGEMIRKTNPSEMKWIIVIILKELKIGMTE
KSIFDVFHPDAEELFNVTCDLRLVCEKLTDPKVRHKRQDIEVGKAVKPQMAERAASCGEA
MKRLHRKEVVAEVKFDGERFQVHKNGGKVKFYSKNYKDHSEYEPAMSNVIIENVLVDKCI
LDGELLGWDSSRNKFTKFGLNQEMAKAAREGIESDRKLCYVAFDVLYVGDTSVIHQTLKE
RHEHLRKVVRTVKGRLETSVPNANRGDGEPCWSIVANHVDDVERFFKEKVGNEGEEGIVI
KDLGSKWEPGDRNKKKWVKVKPDYVNAGSDLDVLIIGGYYGSGRQGGEVGQFLVGLAERL
TPGTYPRRFVSFARVGTGLTDEERDELVTKLKPYFRKSEKKSAPSFYEVTNKEKPDVWVE
SPEKSVIMSISSDIRPILSDVYAAPYSLRFPRFDWVRYDKPWHECLDVQSFLEIIQSSGT
TRRGGAEGFSDGKSKRGRAAIKGGRLNVTVPSHFTRTDVSSVKGESQIFSNKVFYFVNVP
SDHSLDSMHKLAVENGGTFSMNLNDTVTLCIGAESRGIKYEVTKSRGCDIIHYSWVLDCC
SQKQLLPLRPKHFVFLSDSSRKKLQEEIDEFSDSYFWDVDVAELKQTFGNVNRSEDAKMV
DHYKKKYCPCEKWGRFHGCCIYFYLCAKSHCSNWDIFLKIATRRMKAEVSVGGGKVCDNL
SQATHIVVMSIPGHELKFETLLQSFPGDQKYILRRKRLHVIGSQWLEDCLKEGQKLPEVA
YNLKPTTYEESTSEEEKGGDENVYGKHPTSSAHEEKSSESVLETIPHIREPRRKRGRPVG
TSTKKSKTVVSKPPVTKRARVGSKPAKLQEIAFDNESHKTSKQEADAPVAASPEHKMHDH
VFQGIAFDHKPAKQDTDTLEKSGLETENIGLGSRHGLSSSNEESKEENKTDELMKASPEH
ELDDKPSHRKTNATGKFGLEKNEENTVEHKPDLNATGTHCLDNAGSVTCSKPDKDSDYST
SGMLLDLIPSLKRLSEDANVNLPSTLTQEDSSMESPTGEPVKKKKVSYRELAKQLLKD
NT seq 3597 nt   +upstreamnt  +downstreamnt
atgggcgaaaacatcaaattctacgctttggtaagactcttccaccatatttcaacctca
agaactgcccaaatcaaacgcactaaatttcgcagattcctcgattcttactgcgtgaaa
cccactgattatttcccttcaatccgcttaattctaccttcattagaccgcgaaagaggt
tcctatggtctcaaagaagcttccctcgctctcctccttctcgacgcactcgctgtttct
cgggattccgaagatgcccagaagctcatcaattggcgaaaaggaggttccagaatcgcc
ggaaaatacgccggaaacttctctatggtcgccgccgaattcctccaacggcggcagtct
tccgtctccggcgagttgactatccgggaagtgaatgatctcctcgatcggcttgcgaat
gcggatactcgcaatgcgaaggtggatgtgctgggggagatgataaggaagacgaatccg
tcggagatgaagtggataattgtgatcatattgaaggagttgaagattgggatgactgag
aagagtatatttgatgtgtttcatcctgatgctgaggaattgttcaacgtaacgtgtgat
ttacggctagtttgtgagaaattgactgatccgaaagtccggcataagcggcaggacatt
gaggttgggaaagctgtgaaacctcagatggctgagagagctgcgagctgtggagaagct
atgaagaggcttcataggaaggaagtcgtcgccgaggttaagttcgatggagaaaggttt
caagttcataagaatggcgggaaggtaaaattctattctaaaaattataaagatcatagt
gaatatgaacctgctatgtcgaatgttataattgagaatgtgttagttgataagtgtata
cttgatggggagctgttgggttgggatagttcgaggaataaatttaccaagttcgggttg
aatcaggagatggctaaggctgctagggaaggtatagagagtgataggaaattgtgttat
gttgcttttgatgttttgtatgttggggatactagtgtgattcatcaaacattgaaagag
aggcatgaacatcttaggaaggttgtgagaactgtaaagggtcgtttagagacctcggtg
ccaaatgccaatcgcggtgatggtgagccgtgttggtctattgtggctaaccatgtggat
gatgttgagaggttttttaaggagaaggttgggaatgagggggaagaagggattgttata
aaagaccttggttcgaagtgggaaccgggtgataggaataagaagaagtgggttaaagtg
aagcctgattatgttaatgctgggtctgatttggatgttctgatcattggagggtattat
ggttcaggtcgtcaaggaggggaggtgggtcagtttctggttggccttgcagagaggctt
actccaggtacttaccctaggaggtttgtttcctttgctagggtgggtacaggacttact
gatgaagagcgtgatgaattggtgactaagttgaagccgtattttaggaagtctgagaag
aagtcagccccgagtttttatgaagttactaataaggaaaagcccgatgtttgggttgag
agccctgagaagtcagtgattatgtcaatttctagtgatattcgtcccatactttctgat
gtgtatgccgcaccttactccttgaggtttcctcggtttgactgggtaagatatgacaag
ccttggcatgaatgtcttgatgttcagtctttcttggagataatacaatcgagtgggaca
acacgaagaggaggtgcagaagggttttcagatggtaaatcaaaacgtggaagggctgca
ataaagggaggaaggctcaatgtcacagttccttctcatttcactcggactgatgtttct
agtgtgaagggggaatcacaaatattttctaataaggtgttttactttgtgaatgtgcct
tctgatcattccttggattctatgcacaagttggctgtcgagaatggtggaactttctcc
atgaatttgaatgacaccgttactctttgcatcggtgcagagagtcgagggatcaagtat
gaggtaacaaagagccgtggatgtgacattatccactactcttgggttctcgattgttgc
tcgcagaagcagcttcttcccttgaggcccaaacattttgtcttcctttcggattcttca
agaaagaagttacaggaggagattgatgaattctcagactcttacttttgggacgttgat
gttgctgagttgaaacagacttttggcaatgtaaatagatcagaagatgcaaaaatggtt
gaccattacaaaaaaaagtactgtccgtgtgaaaaatggggtcgtttccatggttgctgc
atatatttctatttatgtgcaaagtcccactgttctaattgggacatctttttgaaaata
gccacaaggaggatgaaagcagaagtttctgtaggtggtgggaaagtttgtgacaacctt
tctcaagcaactcatatagtagtcatgtcaattcccggacatgagctgaagtttgaaacc
ttgttgcagagttttccaggagaccaaaagtacatcttacgtagaaaaagactacatgtt
attggatcacagtggttggaggattgtctcaaggaggggcagaaattgccagaagtagca
tacaacctgaagccaactacatatgaagaatctacctctgaagaggagaaaggtggagat
gaaaatgtttatgggaagcacccaacttcctctgctcatgaagaaaagtcgagtgaatct
gttttagaaaccattcctcatattagggaacccagaagaaaacgaggaaggcctgttgga
actagcactaagaaaagcaaaaccgttgtcagcaaacctccagtaacaaaaagggccaga
gttggaagcaagcctgctaaattacaggaaattgcctttgataatgagagtcacaagact
agtaagcaagaagctgatgcaccagttgcagcgagccctgaacataaaatgcatgatcat
gtttttcaggggattgcttttgatcataagcctgccaagcaagatactgatacactggaa
aaatctggtcttgaaactgagaatattggattaggttcaagacatggtttatcaagcagt
aacgaggagagtaaggaagaaaacaagactgatgaactgatgaaagcaagccctgaacat
gaactggatgataagcctagtcaccggaagactaatgcaacaggaaagtttggtcttgaa
aagaatgaagagaatacggttgagcacaagcctgatttaaatgcgacagggacacactgc
ttggacaatgctggctctgttacttgcagtaaacctgataaagatagtgattactctact
tcagggatgttgctagatttgatcccaagtctcaaaaggttgtctgaagatgcgaatgtt
aatttaccatcaacactaacacaagaggattcttccatggaatcacccactggagaacca
gtgaagaagaagaaagttagctatagggaacttgcaaagcagctacttaaagattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (26)   

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