KEGG   Capsella rubella (pink shepherd's-purse): 17898026
Entry
17898026          CDS       T02984                                 
Name
(RefSeq) putative DEAD-box ATP-dependent RNA helicase 44
  KO
K12858  ATP-dependent RNA helicase DDX23/PRP28 [EC:5.6.2.7]
Organism
crb  Capsella rubella (pink shepherd's-purse)
Pathway
crb03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:crb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    17898026
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:crb03041]
    17898026
Enzymes [BR:crb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     17898026
Spliceosome [BR:crb03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    17898026
 Complex C
   U5 SnRNP specific factors
    17898026
SSDB
Motif
Pfam: DEAD Helicase_C ResIII
Other DBs
NCBI-GeneID: 17898026
NCBI-ProteinID: XP_006306246
UniProt: R0I9Q4
Position
Unknown
AA seq 615 aa
MKRSFQGSMLTTTEKEVLDPTVVKKPVFLTKAHREELALKRRHDKTEDRHRRLVQITSSN
SDNSDGNRYRDRTRERGRDRDRDRESEREYREREGKARAEKSVKLEREKEINAMKEQYLG
TTKPKKRVITKPSKKFCFDWENTEDTSSGDMNVLYQNPHEAQLLFGRGFRAGIDRREQKK
QVAAKKREERDKHWSEKKLEEMSERDWRIFKEDFNISYKGSKVPHPMRNWEEAIPLGLEQ
RDVIGIAETGSGKTVAFVLPMLSYISRLPPMREENQSDGPYALILVPTRELVKQIKEETV
KFARYLGLKVISIVGGESIEKQALKLSQGCEILIATPGRLLDCLETRYVVLNQCNYLVLD
EADRMIDMGFEPQVAEVLNAMPSSNLKPENEDEELEEKKIYRTTYMFSATMSSSVERLAR
KYMRNPVVVNTGETTKLVFQQVIMIKESEKFSRLKKLIDELGDEKTAIVFVNTKNKVDFI
VKNLEKISRCRVTTLHAGKSQEQRDISLEGFRQKRFNVLVATDVLGRGLDIPDLAHVINY
DMPNAIDMYTHRIGRTGRAGKTGVATTFLTLEDKDVFYGLKQKLVESNSLVPPELARHEA
SKFKPGTIPDRFSHF
NT seq 1848 nt   +upstreamnt  +downstreamnt
atgaagcgatcgttccaaggatccatgctaactactacggaaaaggaggttctcgatccc
accgttgttaagaaacccgtcttcctcaccaaagctcacagagaagaattagccctaaaa
cgccgccacgataaaaccgaggatcgtcatcgccgcctcgttcagatcactagctccaat
tccgataatagcgatggaaaccgttaccgagatcggactagagaacgaggccgcgaccgt
gacagagacagagagagcgagcgtgagtatcgtgaacgtgaaggcaaagctagggctgag
aaatcagtgaagttagagcgtgagaaggagattaacgccatgaaagagcaatacctagga
accacgaagcctaagaagagagtcatcacgaagccgagcaagaagttctgttttgattgg
gagaacactgaagatacttccagtggagatatgaatgttctataccaaaaccctcacgaa
gctcagcttctgtttgggagagggtttcgcgctgggatagatcgccgtgaacagaaaaaa
caagtggcggctaagaagcgtgaggaaagagataagcactggagcgagaagaagttagag
gagatgagtgaaagagattggcgtattttcaaggaagactttaatatatcttataaagga
tccaaggttcctcacccgatgaggaactgggaagaggctatacctttaggacttgaacag
agagatgttatcggcattgcagagactggttcaggcaaaaccgttgcttttgttctgccg
atgctatcttacatatcaagattgccaccaatgagggaagagaatcagagtgacggtcct
tatgctcttattcttgttccaacaagagagcttgtaaagcagattaaagaagagacggtt
aagtttgcacgttatttggggttaaaagtgatctccatcgttggtggggagtcaatagag
aaacaagcgttgaagctatcacaaggatgcgagattttgattgccacgcctggtcgattg
ctcgattgtcttgagacaaggtacgtggtgttgaaccaatgtaactatttggttcttgat
gaagctgaccgtatgattgatatgggttttgagccacaggttgcagaagtgttaaatgca
atgccttcaagtaatttgaaaccagagaatgaagatgaagagcttgaagaaaagaagatt
tacagaactacgtatatgttcagtgccacaatgtcttctagtgtagagcgtctcgctaga
aagtacatgaggaatccagtcgtggtcaacactggggagaccacaaagctggtctttcaa
caagtgatcatgatcaaagaatcagaaaagttctctaggttaaagaaactgatcgatgag
ctcggtgatgagaagacagcgattgtgtttgtgaacaccaagaacaaggttgacttcatc
gtcaagaatctagaaaagatatcaaggtgtcgtgtgacaacattgcacgcagggaagtcg
caagaacagagagatatcagcttagaagggttcagacaaaagagattcaacgttcttgtt
gcaacagatgttttaggccgtgggcttgatattcctgatttggctcacgtcatcaactac
gatatgcctaacgcaatagatatgtatacgcataggattggacgaactggacgagcaggg
aagacaggtgttgcgacaacgttcttgactctcgaggataaagatgtgttttacggtctg
aagcagaagcttgttgaatctaatagtttggtgccacctgaacttgcgagacatgaagcc
tctaagtttaaaccaggaaccattcctgatagattctcccatttttag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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