KEGG   Clostridium thermosuccinogenes: CDO33_07005
Entry
CDO33_07005       CDS       T05300                                 
Name
(GenBank) polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
cthd  Clostridium thermosuccinogenes
Pathway
cthd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cthd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CDO33_07005
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cthd03019]
    CDO33_07005
   03016 Transfer RNA biogenesis [BR:cthd03016]
    CDO33_07005
Enzymes [BR:cthd01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     CDO33_07005
Messenger RNA biogenesis [BR:cthd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     CDO33_07005
Transfer RNA biogenesis [BR:cthd03016]
 Prokaryotic type
  tRNA degradation factors
   CDO33_07005
SSDB
Motif
Pfam: RNase_PH S1 RNase_PH_C PNPase KH_1 KH_2 Dynamin_M S1_2 DUF5667 DnaT_2
Other DBs
NCBI-ProteinID: AUS96207
UniProt: A0A2K2FCA7
Position
1622645..1624753
AA seq 702 aa
MQKFSMELAGRTLTIEIGKMAQLANGSVLVRYGDTAILSTATASATPREGIDFFPLSVDY
EERLYSVGKIPGGFIKREGKPSEKAILTSRVIDRPIRPLFPKDLRNDVVIVNTVLSVDQD
NSPEIAAMIGTSAAISISDIPWNGPIGGVVLGLVDGEVVINPNTAQREKSQMYVTLAGTK
DKITMIEAGANEVPDDVMLNAVKRGHEDIKRIVEFIEGIRKEVGKPKFEYTSYEVPEEIF
AAVKEFAYEKMREAVLAVDKQDRDAKIEKLTQEIQEHLAESFPEMETQINEAIYKLEKKV
VREYILEEDKRVDGRRLDEIRPLSAEVALLPRAHGSAMFQRGQTQVLTVATLGALGDVQI
LDGIDLEESKRYMHHYNFPGYSVGEAKTSRGPGRREIGHGALAERALEPVIPSQEEFPYA
IRLVSEVLMSNGSTSQGSVCGSTLALMDAGVPIKSPVAGISAGLVIDENNPERFKTFMDI
QGIEDFFGDMDFKVAGTKKGITAIQVDIKVEGLTYEIIEQAFELTRKGREYIIDNVILKT
IEKPRKELSPYAPKILTTIIDPDKIRDVIGPGGKMINKIIQETGVKIDIEDDGKVFVSCV
DIKAGKRAIQIIDGIAKDVEPGQIYMGKVMRITTFGAFVEILPGKEGLVHISKLDKKRVA
KVEDVVNVGDEILVKVIDIDKQGRINLSRKDAMSEEEERKEN
NT seq 2109 nt   +upstreamnt  +downstreamnt
atgcaaaaattcagtatggaattggcaggaagaacattaacgattgaaatcggaaaaatg
gctcaactggcaaatggatctgttttagtaagatatggtgatacagctatactttcaact
gccactgcatccgctacaccgcgggaagggatagacttcttccctttgagcgtggattat
gaggaaagactgtactcagtaggtaagattcccggtggttttatcaagagggaaggaaaa
ccgtcggaaaaggcaatattgacttcgagggttatagacaggcctattaggcctttattt
cccaaagacctcagaaatgatgttgtcatagtaaatacggttttatcggtggatcaggat
aactcaccggaaattgccgccatgataggtacctcagctgcaataagcatatccgatata
ccatggaatggtcctataggtggagtagtgctgggactggtggatggcgaagtggtaata
aacccgaataccgcccagagggaaaagagtcagatgtatgtgactcttgccggcaccaag
gacaagataacgatgatagaagccggagccaacgaagtgccggatgatgtgatgctgaat
gcggtcaagagaggacatgaagacattaaacggatagttgagtttattgagggaatcagg
aaagaagtaggaaagcctaagtttgagtatacctcttatgaggttccggaagaaatattt
gctgctgtcaaagagtttgcatatgagaaaatgagagaagctgttttggcagtggacaag
caggaccgggatgcaaaaatcgaaaagctgactcaggaaatccaggagcatcttgctgag
tcctttccggaaatggagacccagataaatgaagctatatacaagctggaaaagaaggtt
gtaagagaatatatcttagaagaagacaagagggttgacggaagaaggctggatgaaatc
aggccgctttcagcagaggttgcactgctgccaagggcgcacggctcagccatgttccag
cgtggacagacccaagtgcttaccgtagccactcttggagctcttggtgatgttcagata
ttggatggtatagatcttgaggaatcaaaaaggtatatgcatcattacaacttccccggt
tatagcgtgggagaagcaaagacctcaagaggtcccggaagaagagaaataggccatgga
gctctggctgaaagagcccttgagccggtgattcccagccaggaggaatttccttatgcc
atcaggctggtatccgaagtgctgatgtccaatggttctacttcccagggtagtgtttgt
ggaagcaccctggctcttatggacgccggagtaccgataaagagtccggtagcaggtatt
tctgccggccttgtcatagatgagaataatccggaaagattcaaaaccttcatggatatt
cagggaattgaggacttcttcggagatatggattttaaggttgcaggaacaaagaaaggt
ataacagcaatacaggtggatatcaaagtagaaggtctgacatacgaaataatagagcaa
gcttttgaattgacccgcaaaggtcgtgagtatattattgacaatgtcatactgaaaact
attgagaaacccagaaaagaactttcaccctatgctccgaagatactgacaaccatcatt
gaccctgataagataagggatgtaatcggtcccggcggaaaaatgataaacaagataatt
caggaaaccggggtaaaaattgatatagaagacgatggaaaggtatttgtatcctgtgtt
gatatcaaggcaggcaagagggccattcagataattgatggtattgccaaggatgttgag
cctggtcagatttatatgggcaaagtaatgaggataacaaccttcggagcttttgtcgaa
attctgcctggcaaggaaggcctggttcatatttccaaacttgataaaaagcgggttgca
aaagttgaagatgtggtcaatgtaggtgacgagattcttgtaaaggttattgatatagat
aagcagggaagaataaacctttcaagaaaagatgctatgtctgaggaagaggagaggaaa
gaaaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (21)   

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