KEGG   Chloroherpeton thalassium: Ctha_0180
Entry
Ctha_0180         CDS       T00726                                 
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
  KO
K03092  RNA polymerase sigma-54 factor
Organism
cts  Chloroherpeton thalassium
Pathway
cts02020  Two-component system
cts02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:cts00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    Ctha_0180
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    Ctha_0180
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cts03021]
    Ctha_0180
Transcription machinery [BR:cts03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     Ctha_0180
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID LacI HTH_3 HTH_Crp_2 HTH_21 HTH_31
Other DBs
NCBI-ProteinID: ACF12651
UniProt: B3QT08
Position
210966..212519
AA seq 517 aa
MNTQSLSQRQVQTMRLSPQQLLYTKLLQLPLIQLEQRVKQELEENPMLEEFSESDEEAGQ
PEEMATDLSQNNDDENKLNEKSEQNEEDLYIAEKPTKDEPLPKDDDYTKEFDQEIEEYFP
DGDEEGFNVPSFREEPSDESYFQPVFHESFTERVLNDLRYQDVTEKELAIAEEIVGNIDE
DGYLRCPIEVIADGLMTTGIEVTEAEILKVLEKIWYIDPVGIGARNLQECLLIQLEAKYQ
RTEDIDDTLYEQAKLILNKYYHEFTMKHFEKLMTLLSISPEELTQALLLIQSFNPKPGGD
VSASSNYIIPDFIVTFDGKNLVAFSNERNSFQIRISEQYKPLLEDKSQPKGAKEFVRNKY
EAAKNFMTAIEMRRQTLQRVMNALLNLQYEFFTIGPNRLKPMILKDVAEVAGVDISTVSR
VVNGKYVQAHKGILELKYFFSTGLETESGDEISNKLIKEKIKSFIEKEDTRKPLSDDKIS
EMLQQNGFKVARRTVAKYREQMNIPVARLRKQIQSLK
NT seq 1554 nt   +upstreamnt  +downstreamnt
atgaacacccaatcactatcgcaacgacaagtgcaaaccatgcggcttagcccgcagcaa
cttttatacacaaagcttttgcaacttccgttaattcagcttgaacagcgcgtcaagcag
gaattggaggaaaatcccatgctggaggaattttctgaatcggatgaggaagctggccaa
ccagaagaaatggccacggacctttcgcaaaataatgatgatgaaaataagctgaacgaa
aaatcggagcaaaacgaggaggatctctacatcgccgaaaaaccaacgaaagacgaaccg
cttccgaaagacgatgactacaccaaagagtttgatcaagaaattgaggaatattttcct
gatggcgatgaagaaggcttcaatgtgccgtctttccgcgaagaaccatccgacgaaagc
tactttcaaccggtttttcatgagagctttaccgagcgcgttttaaacgatttgcgctat
caagatgtcacagaaaaagaattagcaattgctgaggaaattgtcggaaatattgatgaa
gatggctaccttcgctgcccaattgaagtgattgccgatggcctgatgacaaccggaatt
gaagttactgaagctgaaattttgaaagtgctggaaaaaatctggtacatcgatccggtt
ggcattggcgcaagaaatttacaggaatgtttgctgattcaacttgaagccaaatatcaa
cgaacggaagatatcgacgacacgctctatgaacaagccaagcttattctgaataaatat
taccacgagttcacaatgaaacactttgagaagctaatgacccttctcagtatctcacca
gaagaactcacgcaagcacttttgctcattcaaagctttaatccaaaaccgggcggcgat
gtttcggcttcaagcaattacataatccctgattttattgttacttttgatgggaaaaat
ttggtggccttttccaatgaacgaaattcttttcagatccgaatttcggaacaatacaaa
ccgttgcttgaagacaagtctcagccaaaaggagcaaaagagtttgtccgcaacaaatac
gaagcagccaaaaatttcatgacggccattgaaatgcgtcgccaaaccttgcagcgcgtg
atgaacgctcttttaaatctgcaatatgaatttttcaccattgggccaaaccggttgaaa
ccgatgattttaaaagatgtggctgaagtggctggcgtcgatatttcaacggtgagccgc
gtggtaaatggaaaatatgtgcaagcgcacaagggcattttggaattgaaatatttcttc
agcacaggactcgagaccgaatcgggcgatgaaatttccaacaagctgattaaagaaaaa
atcaaatcgtttattgaaaaagaagatacacgcaagccgctgagcgacgacaaaatctcc
gagatgcttcagcaaaacggattcaaggtggcacgaagaaccgtcgccaaatatcgcgag
caaatgaatattccagtagctcgccttcgaaaacaaatacagtctcttaaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (34)   

Download RDF
DBGET integrated database retrieval system