KEGG   Dermacoccus abyssi: FV141_02815
Entry
FV141_02815       CDS       T06197                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
day  Dermacoccus abyssi
Pathway
day03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:day00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    FV141_02815
  09124 Replication and repair
   03420 Nucleotide excision repair
    FV141_02815
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:day03021]
    FV141_02815
   03400 DNA repair and recombination proteins [BR:day03400]
    FV141_02815
Enzymes [BR:day01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     FV141_02815
Transcription machinery [BR:day03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     FV141_02815
DNA repair and recombination proteins [BR:day03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     FV141_02815
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C DEAD SNF2-rel_dom
Other DBs
NCBI-ProteinID: QEH92589
Position
complement(581810..583441)
AA seq 543 aa
MPNGALIVQSDRTILLEVDHENAEAARRAIAPFAELERAPEHVHTYRVTPLGLWNARAAG
LDAETVVDALITHSRFPVPQSLLLDVAETMDRYGRLVLEKDGEQLVLHSTDKPVLEEVLR
HKKIKPLVGERLDELTVVVHPSERGAIKQELIKVGWPAEDRAGFVDGEAHPIELDTSGWQ
LRPYQAQAVDGFWDGGSGVVVLPCGAGKTLVGAGAMAKAKATTLILVTNTVSARQWRDEL
LKRTSLTEDEIGEYSGARKEIRPVTIATYQVLTLKRKGVYPHLELLDARDWGLVVYDEVH
LLPAPIFRMTADLQARRRLGLTATLVREDNREDDVFSLIGPKRYDAPWKDIESQGYIAPA
DCVEVRVGLSDADRMAYATTEPDERYRFASCATVKDPVVERIVTQHEGAPTLVIGQYLDQ
LETIANRLDADLITGETSVAVRQKLFQQFRDGEITKLVVSKVANFSIDLPEASVAVQISG
TFGSRQEEAQRLGRVLRPKADGRTAHFYSIVTRDTVDANFAAHRQRFLAEQGYAYRIVDE
SDI
NT seq 1632 nt   +upstreamnt  +downstreamnt
gtgccgaacggcgcactcatcgtccagagtgaccgcacgatcctgctcgaagtcgaccac
gagaatgccgaggcggcccgccgggccattgcgccgttcgccgagttggagcgcgcgccg
gagcacgtgcacacctaccgcgtcacgccgctcggcctctggaacgctcgcgctgccggc
ctcgacgccgaaaccgtcgtcgacgcgctcatcacgcacagccgtttccccgtgccgcag
tccctcctgctcgacgtggccgagacgatggatcgctacgggcgcctcgtgctcgagaag
gacggcgaacagctcgtcctgcactccacggacaagcccgtgctcgaagaggtgctgcgc
cacaagaagatcaagcccctcgtcggcgaacgcctcgacgagctgacggtcgtcgtccac
ccgagcgagcgaggcgcgatcaagcaggagctcatcaaggtcggctggcccgcggaggac
cgcgcgggcttcgtcgacggcgaggctcacccgatcgagctcgacacctccggctggcag
ctgcgcccctaccaggcgcaggccgtggacggcttctgggacggcggcagcggcgtcgtc
gtcctgccgtgcggtgccggcaagacgctcgtcggcgcgggcgcgatggcgaaggccaag
gcgacgacgctcatcctcgtgacgaacaccgtcagcgcccgccagtggcgcgacgaactc
ctcaagcgcacctcgctcaccgaggacgagatcggcgagtactccggtgcgcgcaaggag
atccgcccggtgacgatcgcgacgtaccaggtgctcacgctcaagcggaagggcgtctac
ccgcacctcgaactgctcgacgcgcgcgactggggcctcgtcgtctacgacgaggtccat
ctgctgcccgcgccgatcttccgtatgacggccgacctccaggcccgccgccgcctcggc
ctcacggccacgctcgtgcgcgaggacaaccgtgaggacgacgtgttctccctcatcggc
cccaagcgttacgacgcgccgtggaaggacatcgagagccagggctacatcgcgccggcc
gactgcgtggaggtgcgcgtgggcctgtccgacgccgaccgcatggcctacgcgacgacg
gagccagacgagcgttaccgcttcgcgtcctgcgcgacggtgaaggacccggtggtcgag
cgcatcgtcacgcagcacgagggcgcaccgacgctcgtcatcgggcagtacctcgaccag
ctcgagacgatcgcgaatcgcctcgacgccgacctcatcaccggcgagacgtccgtcgcg
gtgcgtcagaagttgttccagcagttccgtgacggcgagatcaccaagctcgtcgtctcc
aaggtggcgaacttctcgatcgacctgcccgaggcgagcgtcgccgtccagatctccgga
acgttcggttcacgccaggaggaggcccagcgcctcgggcgcgtgctgcgaccgaaggcg
gacgggcgcacggcgcacttctattcgatcgtcacgcgcgacaccgtggatgccaacttc
gccgcccaccgacagcgcttcctcgccgagcagggctacgcctaccgcatcgtcgacgag
agcgacatctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

Download RDF
DBGET integrated database retrieval system