KEGG   Solidesulfovibrio carbinolicus: C3Y92_03745
Entry
C3Y92_03745       CDS       T06503                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
dcb  Solidesulfovibrio carbinolicus
Pathway
dcb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dcb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    C3Y92_03745 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dcb03019]
    C3Y92_03745 (rnr)
   03016 Transfer RNA biogenesis [BR:dcb03016]
    C3Y92_03745 (rnr)
Enzymes [BR:dcb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     C3Y92_03745 (rnr)
Messenger RNA biogenesis [BR:dcb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     C3Y92_03745 (rnr)
Transfer RNA biogenesis [BR:dcb03016]
 Prokaryotic type
  tRNA degradation factors
   C3Y92_03745 (rnr)
SSDB
Motif
Pfam: RNB OB_RNB CSD2 S1 AbiEi_4 TBPIP RNase_II_C_S1 HTH_IclR mit_SMPDase
Other DBs
NCBI-ProteinID: QAZ66404
UniProt: A0A4P6HIZ6
Position
complement(844093..846309)
AA seq 738 aa
MTTKRKKKDAKKAPGTGIDAAAVARVFRESGKPLGEKDLLRQLGAPRAKMHDVLAALDEL
LEAGKIIRVRRGFGLVESMHLVTGTLEISRSGVGYVLPEDKRRKDIFIHPKDLGDAWHGD
RVVAAVTRERKDKNHEGRIARVIEHGVVTLPCRVVKRMASDLYLCRPTDPRHTMSFMVDF
LPKDGGRDPMADDVMQVHIGEKLEYKLYSGRGLELLGAQGDVSVQERLVKLNHDIPGPFP
PKVLREAEALPEQPGEADFAGRKDLRALPFVTIDGAKARDFDDAVYVKKRGRAFTLFVAI
ADVSHYVPEGSALDKEALERGNSYYFPQSVEPMLPERISNGLCSLNPHVPRLAVVAEIDF
TAKGVPGRTDFYPAVIESKARLTYSQVNRALFLGDEDERKNLGKILPLLETAEVLARAIH
EVRAARGNLDFDLPEPEILFNLQGEAEDIRPKAHHFGHQLVEEFMVAANEAVARYLTERE
APVLYRVHPEPDPAKLEALFKLLATTDMATKLPVKPGAGDLSAVLRDASGSDVDFLVSRL
ALRTMMQASYSPKNDGHFGLASTCYCHFTSPIRRYADLVVHRSLKAVASGKGAPAKLASK
LPKVAEHISRRERVAMEAEREILKRVTVLFLADKVGREFTGVIGSIADFGFWVELKEVMA
EGMVRLSSLSDDYYQHNAERHELLGERTGRRFRLGQPVSVELSGVDLGRLAVDLTLIEGG
EAPLAVPSVKRKGRRRRR
NT seq 2217 nt   +upstreamnt  +downstreamnt
atgacgaccaagagaaagaaaaaagacgccaaaaaagcgccgggcacaggcatcgacgcc
gccgccgtggcccgggttttccgcgaaagcggcaagccccttggcgaaaaggatttgctg
cgccagctcggcgcgccgcgcgccaagatgcacgatgtcctcgccgccctcgacgaactg
ctcgaggccggcaagatcatacgcgtccgccggggtttcggcctcgtcgaaagcatgcac
ctggtgaccggaaccctggaaatcagccgttcgggcgtgggttacgtcctgcccgaggac
aaacggcgcaaggacatcttcatccaccccaaggacctgggcgacgcctggcacggcgac
cgggtcgtggccgccgtcacccgggaacgcaaggacaagaaccacgaaggccgcatcgcc
cgcgtcatcgaacacggcgtggtcaccctgccctgccgggtggtcaagcgcatggcctcg
gacctgtacctgtgccgccccaccgacccccgccacaccatgagcttcatggtggacttc
ctgccgaaagacggcggccgtgaccccatggccgacgacgtcatgcaggtgcacatcggc
gaaaagctcgaatacaagctctactccggccgtggcctggagctgctcggggcccagggc
gacgtgtccgtgcaggaacggctggtcaagctcaaccacgacatccccggccccttcccg
cccaaggtgctgcgcgaggccgaggccctgcccgaacagcccggcgaggccgacttcgcg
gggcgcaaggatctgcgcgccctgccgttcgtcaccatcgacggagccaaggcccgggac
ttcgacgacgccgtgtacgtcaaaaagcgcggccgggccttcacgctgttcgtggccatc
gccgacgtctcccactacgtgcccgagggctcggccctggacaaggaagccctggagcgc
ggcaactcgtactacttcccccagtccgtggaacccatgctgcccgagcgcatctccaac
gggctgtgcagcttaaatccccacgtgccgcgcctggccgtggtggccgagatcgatttc
acggccaagggcgtgcccgggcgcaccgacttctatccggccgtcatcgaaagcaaggcc
cggctcacctattcccaggtcaaccgggcgctgtttctgggcgacgaggacgagcgtaaa
aacctcggcaagatcctgccgctgctggagacggccgaggtcctggcccgggccatccac
gaggtgcgcgccgcccggggcaacctcgatttcgacctgcccgaaccggaaatcctgttc
aatctccagggcgaggccgaggacatccggcccaaggcccaccacttcggccaccagctc
gtcgaggaattcatggtcgcggccaacgaggccgtggcccgctacctcaccgaacgcgaa
gcgcctgtgctctaccgcgtccaccccgaaccggacccggccaagctggaagcgctgttc
aagctcctggccaccaccgacatggccaccaagctgccggtcaagcccggcgccggcgac
ctgtcggccgtgctgcgcgacgcctcgggctccgacgtcgatttcctggtcagccgactg
gccctgcgcaccatgatgcaggcttcctattcgcccaaaaacgacggccacttcggcctg
gcctccacctgctactgccacttcacttcacccattcgccgctacgccgatctggtcgtc
cataggtcgctcaaggccgtggcctcgggcaagggcgcgccggccaagctcgcctccaaa
ctgcccaaggtggccgagcacatcagccgccgcgagcgggtggccatggaggccgagcgc
gagatcttaaagcgcgtgacggtgctctttctggccgacaaggtgggccgggaattcacc
ggcgtcatcggctccatcgccgacttcggcttttgggtggaactcaaggaagtcatggcc
gagggcatggtgcgcctgtcgagcctgtccgacgactactaccagcacaacgccgagcgc
cacgaactgctgggcgaacgcaccggccggcgcttccgcctgggccagccggtgtcggtg
gaactctccggcgtggacctcggccggctggccgtggatctgacgctcattgaaggcggc
gaagcgcccctggccgtgccttcggtcaagcgcaagggacggcggaggcggcgttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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