KEGG   Dickeya dianthicola: DDI_0457
Entry
DDI_0457          CDS       T05141                                 
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
ddq  Dickeya dianthicola
Pathway
ddq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ddq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DDI_0457
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ddq03019]
    DDI_0457
   03016 Transfer RNA biogenesis [BR:ddq03016]
    DDI_0457
Enzymes [BR:ddq01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     DDI_0457
Messenger RNA biogenesis [BR:ddq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     DDI_0457
Transfer RNA biogenesis [BR:ddq03016]
 Prokaryotic type
  tRNA degradation factors
   DDI_0457
SSDB
Motif
Pfam: RNase_PH PNPase RNase_PH_C S1 KH_1 S1_2 KH_2 aRib DUF2110 SLS1_KH2 DUF4172
Other DBs
NCBI-ProteinID: ATO31625
Position
429251..431371
AA seq 706 aa
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMASIDDTAVFVTVVGAKHAKPGQGFFPLT
VNYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPDGFVNEVQVIATVVSV
NPQVSPDIVAMIGASAALSLSGIPFNGPIGVARVGYINDQYVLNPTTEELKTSRLDLVVA
GTEGAVLMVESEADLLSEDQMLGAVVFGHDQQQIVIENIKSLTAEAGKPKWNWQAPEVNV
ELHNRVQALSEARLGDAYRITEKQERYAQVDAIKSDVVAALLAEDDTLDESELRDILGSI
EKNVVRSRVLNGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER
DAQIIDELTGDRTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKPEA
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD
ILGDEDHLGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
ISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAST
DGEKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATAQSQETVPVSEEE
NT seq 2121 nt   +upstreamnt  +downstreamnt
ttgcttaatccgatcgttcgtaaattccagtacggtcagcataccgtgacactggaaacc
ggcatgatggctcgtcaggctactgctgctgtgatggctagcattgatgatactgcggta
tttgtgaccgtagtgggtgccaaacacgccaagccgggtcagggctttttcccgctgacc
gttaactatcaggagcgtacctacgctgctggccgtatcccaggcggtttttttcgtcgt
gaaggccgtccgagcgaaggtgaaacgctgatctcccgtctgatcgaccgtccgattcgt
ccgctgttcccagatggttttgttaatgaagtgcaggttatcgccactgtggtttccgtt
aatccgcaggttagcccggatatcgttgccatgatcggtgcttctgctgcgctgagtctg
tccggcattccgttcaacggcccgattggcgtggctcgcgttggttacatcaacgaccag
tatgtgctgaacccgactaccgaagagctgaaaaccagccgtctggatctggtcgtcgcc
ggtacggaaggcgcggtgctgatggtggaatccgaagcggacctgctgagcgaagaccag
atgctgggcgcggtagtgttcggtcacgaccagcagcagattgttatcgaaaacatcaag
tcgctgacggcggaagccggcaagccgaaatggaactggcaggcgccggaagttaatgtc
gaactgcataaccgtgtgcaggcgctgtctgaagcccgtctgggcgatgcctaccgcatc
actgaaaaacaggagcgctacgctcaggttgatgccatcaaatccgacgtggttgcggct
ctgctggcggaagatgacacgctggacgagagcgaactgcgcgatattctcggcagcatc
gagaaaaacgtggtgcgtagccgtgtattgaacggcgagccgcgtatcgacggccgtgaa
aaagatatgatccgtggtctggacgttcgtaccggcgtactgccgcgtactcacggttcc
gcactgttcacccgtggcgagactcaggcgctggttaccgcgacgctgggtactgaacgt
gatgcgcagattattgatgaactgaccggcgaccgtaccgatcgtttcctgctgcactac
aacttccctccgtactccgtgggtgaaacgggtatggtcgggtcgccgaagcgccgcgaa
atcggtcatggccgtctggctaaacgtggcgtgttggctgtgatgccgaaaccggaagcc
ttcccgtacactgtgcgtgtggtatccgaaatcactgagtccaatggttcttcttctatg
gcgtccgtgtgcggtgcgtcgctggcgctgatggatgccggcgtgccgatcaaagctgcc
gttgccggtatcgcaatgggcctggtaaaagaaggcgataattatgttgttctgtcggac
atcctgggtgacgaagaccacctgggcgacatggatttcaaagtggccggtagccgtgaa
ggcgtgaccgcgttgcagatggacatcaaaatcgaaggcattacccgcgaaatcatgcag
gtagcgctgaatcaggccaagggtgcgcgtctgcacattctgggcgtgatggaacaagcg
attagtacgccgcgtggcgatatttccgaattcgcgccgcgtattcacaccatcaagatc
agcaccgacaagatcaaagatgtgattggtaaaggtggttcggtgatccgtgcgctgacc
gaagaaactggcaccaccatcgagattgaagacgacggtacggtgaaaattgcatcgacc
gacggcgaaaaagcgaaacatgccattcgtcgtatcgaagagatcacggctgagatcgaa
gtgggccgtatctatcagggtaaagtgacccgcatcgttgactttggcgcttttgtggcc
atcggcggcggtaaagaaggtctggttcatatttctcagatcgccgacaagcgtgttgag
aaagtgaccgattatctgcagatgggccaggaagtaccggtcaaggtactggaagtggac
cgtcagggtcgtgtccgtttgagcataaaagaagcaactgctcaatctcaggaaactgtt
ccggtttccgaggaagaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (21)   

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