KEGG   Dehalococcoides mccartyi CBDB1: cbdbA1702
Entry
cbdbA1702         CDS       T00273                                 
Name
(GenBank) KH domain protein
  KO
K18682  ribonucrease Y [EC:3.1.-.-]
Organism
deh  Dehalococcoides mccartyi CBDB1
Pathway
deh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:deh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    cbdbA1702
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:deh03019]
    cbdbA1702
Messenger RNA biogenesis [BR:deh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     cbdbA1702
SSDB
Motif
Pfam: RNase_Y_N HD KH_1 HDOD KhpA-B_KH LapA_dom KH_2 fvmYukDl_N DUF4407 BTBD16_C
Other DBs
NCBI-ProteinID: CAI83705
UniProt: Q3ZW82
Position
1366546..1368129
AA seq 527 aa
MFEFFMETAPATTTGLPLSAILAIFFSFIIGIVFGGMALFVFRGFIMNRQLRIAQRKATK
MLADSKLEAKDVLVEAKREADKTRNSAETELKERRSELAKQENRVIQKTEALDRKLENLE
QREQSLTNREKSIDETQSQIEEIRENELKRLEEVANMTTEQAKTSLLEMLEGEMQQETSR
RLREWEIKIKAEADEKAREVVSQAIQRCASDVVTETTTNVVPLPSDEMKGRLIGREGRNI
RALEQATGVDLIIDDTPEAVTISSFDPVRREVARQALSKLIIDGRIHPARIEEVVTKAKE
EVEAAMIASGEQAAYQAGVHGLRPEIIKVMGRLKYRTSYGQNVLQHSIEVAQMSGMIGSE
LGVNVTLARRAGFLHDIGKAVDRDVEGTHTQIGADMVKQWEKSPEVIKGVAEHHFDTPTV
SIWGFIVSAADAISSARPGARRESLENYIKRLKALEEIADSFKGVEKSFAIQAGREVRIM
VKPDEIDDLGAMRLARDIVKRIEDGLEYPGQIKVTVIRETRSVDFAK
NT seq 1584 nt   +upstreamnt  +downstreamnt
atgttcgagttttttatggagacagcgccggctaccaccaccggtttgcctttgtctgct
attctggctatctttttcagttttattataggtatagtgttcggcggtatggcactattc
gtattcaggggcttcattatgaaccgccagcttcgtattgcccagcgtaaagctaccaaa
atgctggctgattccaaactggaagctaaggatgtgctggtggaagccaagcgcgaggct
gacaagactcgcaattccgccgaaactgaacttaaggaacgccgttctgaactggccaaa
caggaaaacagggttatccaaaaaacagaggcgctggaccgcaagctggaaaaccttgaa
cagcgtgaacagtctttaaccaaccgggaaaaaagcattgacgaaacccaatctcaaatt
gaagaaatacgcgaaaacgaactaaaacgcctggaagaagtggccaacatgaccactgaa
caggccaaaacgagcctgcttgaaatgctggaaggcgaaatgcaacaggaaacctcccgc
cgcctgcgtgagtgggagataaaaataaaagccgaagcggatgaaaaagcccgcgaggtt
gtttcccaggctatccagcgttgtgcctctgacgtagttaccgaaaccactactaatgtc
gtacccctgcccagtgacgaaatgaagggcaggctgattggccgcgaaggccgcaatata
cgggctttggaacaggcaaccggcgtagacctgataatagatgacaccccggaggcagtt
actatttccagttttgacccggtgcggcgtgaagttgcccgtcaggcactttcaaaactt
atcattgacgggcgtattcacccggcccgcattgaagaagtggtaaccaaggccaaagag
gaagttgaagccgctatgatagcttccggtgaacaggctgcctaccaggcaggcgttcac
ggactgcgacccgaaataatcaaagtaatgggacggctgaaataccgcaccagttacggc
cagaatgtacttcagcacagcatagaagtagcccagatgtccggcatgataggcagtgag
ctgggtgtaaatgttacccttgcccgccgggccggctttctgcatgatataggcaaagcg
gttgaccgagacgtggaaggcacccatacccagataggcgcagacatggttaaacagtgg
gaaaaatctcccgaagttattaaaggtgtggcggaacatcactttgacacccccaccgtt
tccatctggggctttatagtatctgccgcagatgccatttcttcggccagacccggtgcc
cgccgcgaatcactggaaaactacatcaaacgtctgaaggctcttgaagagattgctgac
agcttcaaaggggttgaaaaatcctttgctatccaggcaggacgtgaagtacggataatg
gtaaaacctgatgagattgatgatctgggagctatgcggctggccagagatatcgtcaag
aggattgaagatggtctggaataccccggacagattaaagttaccgttatacgggaaacc
agatccgtagactttgccaagtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

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