KEGG   Dehalogenimonas formicexedens: Dform_01094
Entry
Dform_01094       CDS       T04654                                 
Name
(GenBank) excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
dfo  Dehalogenimonas formicexedens
Pathway
dfo03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dfo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Dform_01094
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dfo03400]
    Dform_01094
DNA repair and recombination proteins [BR:dfo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Dform_01094
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Dform_01094
SSDB
Motif
Pfam: UvrA_inter UvrA_DNA-bind ABC_tran SMC_N AAA_16 AAA_29 RsgA_GTPase nSTAND1 nSTAND3 AAA_23 AAA_25 AAA_15 NACHT ATPase AAA_18 AAA_33 DnaJ_CXXCXGXG cobW Sigma54_activat Viral_helicase1 NB-ARC DUF5351 dNK Cytochrome_C7
Other DBs
NCBI-ProteinID: APV44429
UniProt: A0A1P8F7H7
Position
complement(1033225..1036053)
AA seq 942 aa
MPLDNIVVKGAREHNLKNIDVTIPRDKLVVITGASGSGKSSLAFDTIYAEGQRRYMESLS
AYARQFLGRMEKPDVDYIEGLSPAISIDQKGASRNPRSTVGTTTEIYDYLRLLFARVGHP
HCPGCGREIAMQAVEQIVDTVKALPAESRILVLAPLVKDRKGEHQAMFKELRKSGYARVR
IDGTVIDLADDIELDKKKKHKIEVVVDRLVIGQSDTQSRLADSIETALKLGDGVVVVSII
DGQEHLFSEKFACADCGISLGEIEPRSFSFNSPHGACPDCTGLGIKMEFDPDLVIPNKKL
SLAEGAIHPYQWQTWYFSQLEDIARRFNFSLNAPVERLTPEQMEVVLYGEGGSRIKYKNR
FGRTREYTSGFEGVIPRLERLYKDSESEQVRAGIERYMMATPCPTCGGKRLKPEALSVLI
DGKNIAEISALSVVDSLQWVNRLADARTPLSEREQLIANQILKELKSRLGFLEDVGLDYL
SVDRGSATLSGGESQRIRLATQIGSGLMGVLYICDEPTVGLHPADDSRLIDTLKRLRDLG
NSIIVVEHDEAMMRAADWIVDLGPGAGEHGGHIIVSGPLDEVLDCRHSITGQYLSGRKFI
PLPEHRRPGMGKEMVIRGARQNNLKNIDVHIPLGKLVCISGVSGSGKSTLVNEILFKKLA
QVFNGSREKPGDHDGIDGLEYIDKVIAIDQSPIGRTPRSNPATYTGAFTPIRDLFATVPE
ARVRGYNSGRFSFNIKGGRCEACHGEGYIEIEMQFLPDVTVPCDVCHGQRYSREVLDIKF
KDKNIAEVLDMTVDHALDFFDHFPAIKSKLKSMHDVGLGYIRLGQPAPTLSGGEAQRIKL
ASELARRAVGHTLYILDEPTTGLSFDDVAALLKVMQRLVTAGNSVVVIEHQLDIIKNADW
VIDLGPGAGHRGGQIVAVGTPEQVAAKQGSATGEYLKKVLPV
NT seq 2829 nt   +upstreamnt  +downstreamnt
atgcctttagataacattgttgtaaaaggtgcccgcgagcacaacctcaaaaatattgac
gttaccatccccagggacaaactggtagtaatcaccggggcgtcggggtcggggaagagt
tcgcttgccttcgacaccatctacgctgaaggccagcggcggtacatggaatccctgtca
gcctacgcgcggcagttccttggccgcatggaaaaaccggatgtggattacatcgagggc
ttgtctccggcgatttcaattgatcaaaagggcgcttcgaggaacccccgttcaacggta
gggacgaccaccgagatctatgattacctgcgcctgctctttgcccgcgtcggccatccg
cattgcccgggctgcggacgggagatcgccatgcaggcggtcgagcagatcgtggacacc
gtaaaggcgcttccggcagagtcccgtatcctggttctcgcgccactggtcaaagaccgg
aaaggcgaacaccaggcgatgttcaaggaactccgcaagtccggttacgcccgtgtccgc
atagacggcacggtgatagacctggcggatgacatcgaactcgacaaaaagaagaaacac
aaaatcgaagtcgtcgtcgaccgcctggtcatcggccagtcagatacccagagtcggttg
gctgactcgatcgagacagctctgaagctgggcgacggagtggtagtcgtttcgataatc
gacggccaggaacatctattttccgagaagttcgcctgtgccgattgcggtatttcgctg
ggcgagatcgaaccgcgaagtttcagtttcaattcaccccacggcgcctgtccggattgc
accggcctcgggattaaaatggagttcgatcccgacctggtgatcccgaacaaaaagtta
tcgctcgccgaaggcgccatccatccctaccagtggcagacctggtacttttcacaactc
gaagatattgcccgccgctttaattttagccttaacgcgccggtggagcgcctgacgccg
gaacaaatggaggttgtcctttacggcgagggcggcagccggatcaaatacaagaaccgg
ttcggcaggaccagggaatacacctcagggttcgagggagtcatccctagattggaaaga
ctttacaaggattccgaatcggaacaggtgagggcgggtatcgagcgttacatgatggct
actccatgccctacctgcggcggcaaacggctcaagcccgaggcactgtcggtcctgatc
gacggcaaaaatatcgccgagatctccgcgttgtcggtggtcgatagcctgcaatgggtc
aaccgccttgccgatgccaggacaccgctgtccgagcgcgagcaactcatcgccaatcag
atattgaaagaattgaaatcgagattgggatttctcgaagatgtcgggctcgactatttg
tcggtggacaggggttcggcgacactgtcgggtggcgaatcgcagcgtatcaggttggcg
acccagatcggttcgggcctcatgggcgttctttacatctgcgacgagccaacggtgggt
cttcatcccgccgatgattcccgcctcatcgacaccttgaaacgattgcgcgacctcggc
aattcgatcattgtcgttgaacatgatgaagccatgatgcgcgctgccgactggattgtc
gacctgggtcccggcgccggtgagcacggggggcacatcatcgtctccgggcctctcgat
gaagtcctggattgccgtcattcgataaccgggcaatacctttccgggcgcaagttcata
ccattgcccgagcatagacggccggggatgggcaaagaaatggttattcggggcgcgcgc
cagaacaatcttaaaaatatcgatgttcacattccgctcgggaagctcgtttgtatttct
ggcgtctcggggtcaggaaagagcacgctggtgaacgagattttgtttaaaaaactggcc
caggtcttcaacggttcccgcgagaaacccggcgaccatgacggcatcgacgggctggaa
tacatcgataaagtcatcgccattgaccagtccccgatagggcggacgccgcggagcaac
ccggcaacatacaccggcgccttcactcctattcgtgacttatttgccaccgtcccggaa
gcccgtgtccgaggctacaattccggccgtttttccttcaatatcaaaggcggccgttgc
gaagcttgccacggcgaaggctacatcgagatcgagatgcaatttttgcccgatgtcacc
gtgccctgcgacgtatgccacggccaacgctattcccgcgaggtactagacatcaagttc
aaggataaaaacatcgccgaagtgctcgacatgaccgtagaccatgccctcgatttcttc
gaccactttccggcaatcaaatcgaagttgaaaagcatgcacgatgtcggtttgggttat
atccgtttgggccagcccgcgccgacattgtccggcggtgaagcccagcggatcaaactc
gcctcagaattggcccggcgcgccgtcgggcacaccctttacattctcgatgagcccaca
accgggctttcttttgatgatgtggcagcgctcttgaaagtgatgcagcgccttgtaacc
gcggggaactcggtggtagtcatcgagcaccagctagacattataaaaaatgccgattgg
gttatcgaccttggacctggcgcgggtcatcgaggcggtcaaattgtggcagtggggacc
ccggaacaggtcgccgcaaagcagggatcggcaacaggggaatacctgaaaaaagtactg
ccggtttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (24)   
   Pfam (24)   
All databases (32)   

Download RDF
DBGET integrated database retrieval system