KEGG   Delftia sp. HK171: BO996_27240
Entry
BO996_27240       CDS       T04584                                 
Name
(GenBank) ATP-dependent DNA helicase
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
dhk  Delftia sp. HK171
Pathway
dhk03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dhk00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    BO996_27240
  09124 Replication and repair
   03420 Nucleotide excision repair
    BO996_27240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dhk03021]
    BO996_27240
   03400 DNA repair and recombination proteins [BR:dhk03400]
    BO996_27240
Enzymes [BR:dhk01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     BO996_27240
Transcription machinery [BR:dhk03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     BO996_27240
DNA repair and recombination proteins [BR:dhk03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     BO996_27240
SSDB
Motif
Pfam: Helicase_C_2 DEAD_2 DEAD HBB
Other DBs
NCBI-ProteinID: APE51250
Position
complement(6186323..6188677)
AA seq 784 aa
MSYTVAVRALCEFTARAGDLDLRFTPAPSALEGMAGHSLVQSRRGKDYETEISLAGEYGD
LRVRGRADGFDAGVGQLEEIKTYRGQIEGVRAHHRALHWAQARIYAHLLCQARGLQRLRV
ALVYFNVGNSEETVLVQEEDAATLRAFFEQQCALFLDWARSEAAHRAAREAALAALRFPM
QGFRAGQRELAVAVYRVARAQQGGQCLMAQAPTGIGKTLGTIFPMLKAMPDQGLDRLFFL
TAKGTGHGLALQALASVNRQIAEQHPPLPEEPDAPQPLPSPPAPPARLRVLAILARDKAC
EHPDKACHGDSCPLARGFFDRLPAARAAALQQAPWDPPAVRAVALAHDICPYYLSQELVR
WSDVVVADYHYFYDSAAMLYALTQAQQWKVGVLVDEAHNLLERARRMYTAELSQFALAAA
RKSATGAVRKALDRLSRSWSALNREQTASYQAHEEVPAGLLGAVQRAVAAIADANADSPM
LPGDPVLDFYWEALQFMALAEQFGGHALFDVHLLPGRSGPRRTPASTLCIRCVVPAPHLA
ARHAAAHASVLFSGTLSPPHFYRDILGLPEGTHWLEADSPFQADQLDVQVAGHISTRYRD
RDRSLRPIADLVAAQYARRPGNYLCFFSSFDYLQRVAECLQRTHPDLPVWLQTPSMDEEG
RAAFLARFTEAGQGVGFAVLGGAFSEGVDLPGKRLIGAFVATLGLPQVNPVNEEMKRAMD
RQFGADKGYDYSYLYPGLRKVVQAAGRVIRSERDRGVVFLIDDRYRRGEVQALLPRWWQV
EGMR
NT seq 2355 nt   +upstreamnt  +downstreamnt
gtgagctacaccgtggccgtgcgcgcgctgtgcgagttcacggcacgcgcgggcgacctg
gacctgcgcttcacgcccgcgcccagcgcgctggagggcatggccggccacagcctggtg
cagtcgcgcaggggcaaggactacgagaccgaaatcagcctggccggcgaatacggcgac
ctgcgcgtgcgcggccgcgccgacggcttcgacgccggggttggccaactcgaggaaatc
aagacctaccgtggccagatcgagggcgtgcgcgcccaccaccgcgccctgcactgggcc
caggcgcgcatctacgcccatctgctgtgccaggcgcgcggcctgcagcggctgcgcgtg
gccctggtgtatttcaacgtgggcaactcggaggaaaccgtgctggtgcaggaggaagac
gcggccacgctgcgcgccttcttcgagcagcaatgcgcgctgttcctggactgggcgcgc
agcgaggccgcccaccgcgcggcgcgcgaggcggcgctggccgcgctgcgctttcccatg
cagggctttcgcgccggccagcgcgagctggccgtggccgtctaccgcgtggcgcgcgcg
cagcagggcggccagtgcctgatggcgcaggcgcccacgggcatcggcaagacgctgggc
accatcttccccatgctcaaggccatgccggaccagggcctggaccggctgttcttcctc
acggccaagggcacgggccatggcctggcgctgcaggcgctggccagcgtgaaccggcag
atcgccgagcagcatccgccattgcctgaggagccggatgcgccacaaccgctgccctcg
ccacccgcgccacccgcaaggctgcgcgtgctcgccatcctggcgcgcgacaaggcatgc
gagcatcccgacaaggcctgccacggcgactcctgcccgctggcgcgcggcttcttcgac
cgcctgcccgccgcgcgcgccgccgcgctgcagcaggcgccctgggacccacctgccgtg
cgtgccgtggcgctggcgcacgacatctgcccctactacctgtcccaggaactggtgcgc
tggagcgacgtggtcgtggccgactaccactacttctacgacagcgctgccatgctgtac
gcgctcacccaggcccagcaatggaaggtgggcgtgctggtggacgaggcccacaacctg
ctcgagcgcgcgcgccgcatgtacacggccgagctgtcgcagttcgcactggccgccgcc
cgcaagtcggccaccggtgccgtgcgcaaggcgctggaccggctcagccgcagctggagc
gcgctgaacagggagcagaccgccagctaccaggcccatgaggaagtgcccgcaggcctg
ctgggcgccgtgcagcgcgccgtggccgccatcgccgacgccaatgccgacagccccatg
ctgcccggcgacccggtgctggatttctactgggaggcgctgcagttcatggcgctggcc
gagcagttcggcggccatgcgctgttcgatgtccacctgctgcccgggcgctcaggtccc
cgtcgcacgccggcctccacgctgtgcatacgctgcgtggtgcccgcgccccacctggcg
gcacgccatgcggcggcccatgcctcggtgctgttctcgggcacgctgagcccgccgcac
ttctaccgcgacatcctgggcctgcccgaaggcacgcactggctggaggccgactcgccc
ttccaggccgaccagctcgatgtgcaggtggccggccacatctccacgcgctaccgggac
cgcgaccgttcgctgcggcccatcgccgacctcgtggccgcgcagtacgcgcgccggccc
ggcaactacctgtgctttttcagcagcttcgactacctgcagcgcgtggccgaatgcctg
cagcgcacccatcccgatctgccggtctggctgcagaccccgtccatggacgaagagggt
cgcgcggccttcctggcccgcttcaccgaagccggtcagggcgtgggctttgccgtgctg
ggcggggcgttctccgagggcgtggacctgcccggcaagcgcctcatcggcgccttcgtg
gccacgctgggcctgccccaggtcaatcccgtgaacgaagagatgaagcgcgccatggac
cgccagttcggcgcggacaagggctatgactacagctacctctacccggggctgcgcaag
gtggtccaggccgcaggccgcgtcatccgcagcgagcgcgaccgcggcgtggtctttctc
atcgacgaccgctatcggcgcggcgaggtgcaggcgctgctgccgcgctggtggcaggtg
gagggcatgcgatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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