KEGG   Dermabacter jinjuensis: COP05_09175
Entry
COP05_09175       CDS       T06191                                 
Name
(GenBank) helicase
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
djj  Dermabacter jinjuensis
Pathway
djj03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:djj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    COP05_09175
  09124 Replication and repair
   03420 Nucleotide excision repair
    COP05_09175
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:djj03021]
    COP05_09175
   03400 DNA repair and recombination proteins [BR:djj03400]
    COP05_09175
Enzymes [BR:djj01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     COP05_09175
Transcription machinery [BR:djj03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     COP05_09175
DNA repair and recombination proteins [BR:djj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     COP05_09175
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C DEAD SNF2-rel_dom AAA_30 AAA_22
Other DBs
NCBI-ProteinID: ATH97237
Position
1996919..1998592
AA seq 557 aa
MSRAGSAGTGALIVQSDKSILLEVAHPAAEEARASIAPFAELEKSPEHVHTYRLTNLGLW
NAKAAGFDAEWVVDALLTHSRFAVPNALLVDVADTMERYGVLSLHNSPAHGLVLLAKDQT
ILTEVLRSKRIAPLVGERIDDTTVTAHPSERGALKQQLLKLGWPVEDLAGFVDGESHPIA
LTDSPSTWQLRPYQREAVEHFTKGGSGVVVLPCGSGKTTVGAGAMAALERTCLVLVTNTV
SARQWRRELLERTSLTEGEIGEYSGAKKEIRPVTIATYQVLTSKRRGIHPHLELVSARDW
GLIIYDEVHLLPAPVFRMTADLQARRRLGLTATLVREDGREGEVFSLIGPKRYDAPWKLI
EAQGWIAPAEMTEVRVTMSSSERKVYASAEPRERQRLAATSPEKVPVVEQLVARHRGEGT
LVIGQYLDQLDELAERLAAPVVTGDTPLKERESLFTQFREGEIDLLVVSKVANFSLDLPE
ASVLIQVSGAFGSRQEEAQRLGRIVRPKRDGRTAHFYTVVTRDTQDQDFAQNRQRFLAEQ
GYGYTILDARELRGGSV
NT seq 1674 nt   +upstreamnt  +downstreamnt
ttgtctagggcggggagtgcgggcacaggcgctctcatcgtccaatccgataaatcgatc
cttctcgaggttgcccacccggcggcagaagaagcacgcgcgtcgatcgcgccattcgct
gagctcgagaaatcgcccgagcacgtccacacgtatcggctcacgaacctggggttgtgg
aatgcgaaggctgcgggtttcgatgcggaatgggtcgtcgatgccctcctcacgcattcg
cgttttgccgttcccaacgcgctgctcgtggacgtcgccgacacgatggagcgctacggc
gttctgagcctccacaactctcccgcgcacggcctcgtgctcctcgcgaaggatcagacg
atcctgacggaagttctgcgctcaaagcgcatcgcgccgctcgtgggggaacgcatcgat
gacacgacggtgactgctcaccccagtgagcgcggcgcgctcaagcagcagctcctcaaa
ctggggtggcccgtcgaggatctcgcgggtttcgtggacggcgagagccacccgattgca
ctcacggattccccgagcacatggcagcttcgcccatatcagcgcgaggcggttgagcac
ttcacgaagggtggcagcggcgttgtcgtgctcccgtgcggatcgggcaagacgaccgta
ggagcgggcgcgatggcggcgctcgagcgcacgtgcctcgtgctcgtgacgaacacggtt
tccgcccggcaatggcgccgcgagcttctcgagcgcacgtcactcacggagggcgaaatc
ggcgagtacagcggcgccaagaaggagatccgcccggtcacgattgcgacgtaccaggtg
ctcacgtcaaagcgccgcggtattcatccccatctcgaactcgtgagcgcccgcgattgg
ggcctcatcatttacgacgaggttcatctacttccggcccccgtgtttcgtatgaccgcc
gacctccaggcccggcgacggctcggcctcacggcgacgctcgtacgcgaggatggccgc
gagggcgaggtgttctcgctcatcggccccaagcgttacgacgcgccgtggaagctcatc
gaggcgcagggctggatcgccccggcggagatgacggaggtgcgcgtcacgatgtcgagc
tccgagcgcaaggtgtacgcctcggcggagccgagggaacggcagagactcgcggcaacg
agccccgagaaagtccccgtcgtcgagcagctcgttgcgcgacaccgaggtgagggcacg
ctcgtgatcggtcagtatctcgatcagctcgacgagcttgccgaacgcctcgcggctcca
gtcgtcacgggcgacactcctctcaaggagcgcgaatcgctttttacgcagttccgcgaa
ggcgagatcgaccttctcgtcgtctcgaaggtcgcgaacttctcgctcgatcttccagag
gcgagcgtgctcatccaggtgagcggtgctttcggctcccgtcaagaggaggcgcagcgg
ctcggccggatcgtgcggccgaagcgcgatgggcgcacggcgcatttctacacggtcgtg
acgcgcgatacgcaggatcaggactttgcacagaaccggcaaaggttcctcgcggagcag
ggctacggttacacgatccttgacgcgcgagagctcagaggcgggagcgtctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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