KEGG   Desulfofundulus kuznetsovii: Desku_3296
Entry
Desku_3296        CDS       T01499                                 
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
  KO
K03092  RNA polymerase sigma-54 factor
Organism
dku  Desulfofundulus kuznetsovii
Pathway
dku02020  Two-component system
dku02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:dku00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    Desku_3296
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    Desku_3296
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dku03021]
    Desku_3296
Transcription machinery [BR:dku03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     Desku_3296
SSDB
Motif
Pfam: Sigma54_CBD Sigma54_DBD Sigma54_AID HTH_Tnp_ISL3 HTH_17 HTH_Crp_2 HTH_23 HTH_3 HTH_IclR HTH_21 HTH_AraC Xre-like-HTH Sigma70_r4 Phage_CII
Other DBs
NCBI-ProteinID: AEG16782
Position
complement(3313633..3315048)
AA seq 471 aa
MRLGYGLNVEQTQKLIMTPELRQAITVLQLSSLELSLYIEQQLQENPLLELREEEGDGNG
EEGEFEWELEREEENREYDLDWEEYFQDSSDLGFPRAERDPEPPAHNYESFLSQAPTLME
HLMFQLYLSKCSPEARVIGEYLIGNIDEHGYLQTSVEEAAKQLAVHPGAVEETLKLIQTF
DPPGVGARTLQECLLIQVNQLGIKDTLLEKIIRYHLVDLARGKLNRLAQQFNVHVREIQR
VADILKTLDPKPGRNFSTPHDVRYVVPDIVVEKVGDDYVILINDVSVPRLTINPTYRSVL
SQQENYDSRTRRFVESKLNAAAWLIRSIEQRRLTLYKVASCLVQLQRDFLDHGVKYLKPL
NLKQVAEMVGLHESTVSRATSNKYIQTPQGVFEMKYFFPTGINSDGGNLTSAESIKKMLQ
EIVAAEDPKEPLNDQKIAEILCKQGIHISRRTVAKYRGELGIPPVQQRKRY
NT seq 1416 nt   +upstreamnt  +downstreamnt
atgcgcctgggttacggacttaacgtggaacaaacgcaaaagttaatcatgactcccgag
ctgcgtcaggccataaccgtgctgcagctgtcctccctggagctttctctgtatatagaa
caacagctgcaggagaatcctcttctggagctgcgggaagaagaaggcgacggaaacggg
gaagaaggagaatttgagtgggagcttgagagggaagaagaaaacagagaatacgatctg
gactgggaggagtatttccaggattccagcgatctgggttttccccgggcggagcgggat
cccgagccccctgcccacaattacgaaagttttctttcccaggcgcctaccctgatggaa
cacctgatgttccagctgtatttgagcaaatgcagccccgaggcaagggttatcggcgaa
tacctgatcggcaatattgacgagcacggctacctccagaccagtgtggaggaggccgcc
aaacagctggccgtacatcccggggccgtagaagagacgctgaaactgatccagaccttt
gacccgccgggggtaggtgcccgtacccttcaggaatgcctgctcattcaggtcaaccag
ttgggcattaaagatacgctgctggaaaagattatccgctatcacctggtggatctggcc
aggggcaagcttaaccgcctggctcagcagttcaatgtccatgtccgggaaatccagcgg
gtggccgatattttgaaaacccttgacccgaagcccggccgtaatttttccaccccccat
gacgtgcgctatgtggtaccggatatagtggtggaaaaggtgggagacgactatgtcatc
cttatcaacgatgtatccgtgccccgcctgaccatcaaccctacctaccgctccgtgcta
agccagcaggaaaattacgactcccgcactcgccggtttgtggaaagcaagctcaatgcg
gcggcctggttgatccgcagcatagaacagcggcgtttgaccctttacaaggtggccagc
tgcctggtgcagctgcagcgggatttcctggaccacggggtgaaatatttaaaacctctt
aatttaaaacaggtggctgaaatggtcggcctgcacgaatctaccgtgagccgggccact
tccaacaagtatatccagaccccccagggagtatttgaaatgaaatatttcttccctacc
gggatcaacagtgacggcgggaacctgacctctgctgaaagcattaagaagatgctccag
gaaatagtggcggcggaggatcccaaagagcccttaaatgaccagaagattgctgaaatt
ttatgtaaacaaggaattcacatctcccggcgcaccgtagctaaataccggggcgaactg
ggcatcccccccgtgcagcagaggaagcggtactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (14)   
   Pfam (14)   
All databases (22)   

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