KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os08t0416100-01
Entry
Os08t0416100-01   CDS       T02163                                 
Symbol
Os08g0416100
Name
(RAP-DB) DEAD-like helicase, N-terminal domain containing protein.
  KO
K14808  ATP-dependent RNA helicase DDX54/DBP10 [EC:5.6.2.7]
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:dosa03009]
    Os08t0416100-01 (Os08g0416100)
Enzymes [BR:dosa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Os08t0416100-01 (Os08g0416100)
Ribosome biogenesis [BR:dosa03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    Os08t0416100-01 (Os08g0416100)
SSDB
Motif
Pfam: DEAD Helicase_C DBP10CT ResIII
Other DBs
RAP-DB: Os08t0416100-01
Position
chr08:complement(join(19907143..19907581,19905368..19906529,19905230..19905272,19904907..19905008,19903475..19903514,19903230..19903306,19903042..19903094,19902294..19902375,19902165..19902215,19900150..19900285,19898788..19899158))
AA seq 851 aa
MARLNPSKPSSRGGKPRSSSADAMAEHKPLPGRPKREGEGASKRKAKSGGFESMGLCEEV
YRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAGAGI
RALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENPDIIIATPGRL
VHHLAEVEDLNLRTVEYVVFDEADSLFSLGLIQQLHDILHKLSDTRQTLLFSATLPQALA
DFAKAGLRDPQIVRLDLDKKISPDLKLAFFTLRQEEKLAALLYLVRERISSEEQTIIFVS
TKHHVEFLNILFREEGLEPSLSYGAMDQEARNIHISKFRARKTMILIVTDVAARGLDIPL
LDNVVNWDFPAKPKLFVHRVGRVARQGRSGTAYTFVTSEDMAYLLDLHLFLSKPLRPAPT
EEELLKDMEGMNLKIDRALANGETVYGRFPQTIIDLVSDGIKEVINGCTDLIALEKPCTN
AFHLYLKTRPMPSTESIRRVKDLPREGLHPIFRDVLGSDELSALAFSERLKSFRPKQTIL
EAEGEAARGSNQWLDVMKKKREVHEGIINLVHQKNNVDHEPKEELVENISNWERKDVCGN
KRKLQSFRDEEYYISSVPQNQHLEAGLSVRANEGFVENRLDAAVLDLVDDETSGMQAQKT
RYHWKKNKFVKLNSGDRVTATGKIKTESGAKLKPTKTGIYKKWQQKTHRSIDTGRKFGGF
AEEGASTTGSHQRGNRKHTAVGRGRRYIPNADVPSEIRNPEQIQKSRQQKAMDIARMKNR
STKESKFQKFQKNNRRHDGPLKDGKFQKNRRPDGNGKNRRPDGNGKGRGKGKGNANGFGK
GKGKMKGKGTR
NT seq 2556 nt   +upstreamnt  +downstreamnt
atggcgcgcctcaacccctccaaacccagctcccgcggaggcaagccgaggtcctcctcc
gcggacgccatggcggagcacaagccgctgccggggcggccgaagcgggagggggaaggg
gcgagcaagaggaaggccaagtcgggcgggttcgagtcgatggggctgtgcgaggaggtg
taccgcggggtgcgccacaaggggtaccgcgtgcccacccccatccagcggaaggccatg
ccgctcatcctcgccggccacgacatcgccgccatggcgcgcacgggctccgggaagacc
gccgccttcctcgtgcccatgatccagcgcctccgccgccacgacgcgggcgccggcatc
cgcgcgctcatcctctcgccgacccgcgacctcgccacgcagacgctcaagttcgcgcag
cagctcgggaagttcactgatctaaagattagcctgattgttggtggagatagcatggag
agtcagtttgaggaattggcagaaaatccggatatcataattgcaacacctggcagactc
gtgcaccatctggcggaggttgaggacttgaatcttcggacagtggaatatgttgtgttt
gatgaggcagattccctctttagcttggggttaatccagcagctgcatgacattctacat
aagctgagtgatacacgacaaacattgctcttcagcgccaccttgccacaagcccttgca
gattttgcaaaagctggtctacgtgacccacaaattgtaagacttgatttggacaaaaag
atcagtcctgatcttaaacttgcctttttcacgctgcgtcaggaggagaaattagctgct
ttactgtacttggtcagggagcgaatcagctctgaggaacagacaataatatttgtttca
accaagcatcatgtggagttcctaaatattctgttccgggaggagggcttagaaccttcc
ctttcctatggtgctatggatcaagaagcccgcaatattcatatttcaaaattcagggca
aggaaaactatgatacttattgtgacagatgttgctgcaaggggtctggatattccattg
cttgataatgtggtgaactgggacttccctgcaaagcctaaattattcgttcatagggtt
ggcagagtagctcgacaaggtagaagtggcacagcatatacttttgtcacttcggaggac
atggcatatttattggacctacatcttttcctttcaaagcctcttagacctgctccaaca
gaggaggaacttctgaaggatatggagggaatgaatttaaaaattgatcgtgctcttgca
aatggagaaactgtgtatgggcgttttcctcagacaatcattgatcttgtatctgatgga
ataaaagaagtcatcaatggatgtacagatctaattgcattggaaaagccatgcactaat
gctttccatttgtatctgaagactcgtccaatgccttcaacagaatcaatcagaagggta
aaagatttgcctcgtgaaggtcttcatccaattttcagggacgtacttgggtcagatgag
ctttcagctcttgcattctcggaacgcttgaaatcatttcggccgaagcagacgatttta
gaggctgaaggtgaagctgctaggggttcaaatcaatggctagatgtgatgaagaagaaa
agagaagtgcatgagggaattataaatttagtacatcaaaagaataatgttgatcatgag
ccaaaggaagaattggtagagaatatttcaaactgggagagaaaagatgtttgtggtaat
aagcggaagttacagagctttagagatgaggaatactacataagttcagtgcctcaaaac
caacatttggaagctggactgtcagtgagggccaacgaaggatttgttgaaaatagattg
gatgctgctgttcttgatctagttgatgatgaaacttctggtatgcaagcacagaaaact
cgatatcactggaaaaagaacaagtttgtcaagttaaatagtggggatcgtgtcactgcc
acaggaaagattaagacagaaagtggtgcgaagttaaagccaacaaaaacagggatatac
aagaaatggcaacagaagacacatagatctatcgatactggtagaaaatttggtggcttt
gcagaagagggtgcatccacgacaggtagccatcaaagaggaaacagaaaacacactgca
gtgggacgggggcgtcgctatataccgaacgccgacgtaccgtctgagattagaaatccc
gaacaaatacagaagagcaggcagcaaaaagcaatggatattgcccgcatgaagaacaga
tccacaaaagagagtaaattccagaaattccagaagaacaacaggaggcacgatggaccc
ttgaaagatggcaaattccagaagaacaggagaccggatggcaatggaaagaacaggaga
ccggatggcaatggaaagggacgggggaaaggcaaaggaaatgcaaatggatttggtaaa
gggaagggaaaaatgaaagggaagggcacaaggtga

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Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
   RAP-DB (1)   
Protein domain (4)   
   Pfam (4)   
All databases (11)   

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