KEGG   Danio rerio (zebrafish): 108449885
Entry
108449885         CDS       T01004                                 
Symbol
npas4l
Name
(RefSeq) neuronal PAS domain-containing protein 4-like
  KO
K26457  neuronal PAS domain-containing protein 4
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:dre03000]
    108449885 (npas4l)
Transcription factors [BR:dre03000]
 Eukaryotic type
  Basic helix-loop-helix (bHLH)
   Factors with PAS domain
    108449885 (npas4l)
SSDB
Motif
Pfam: PAS_3 PAS_11 PAS_4 PAS HLH Pentapeptide_4 Pentapeptide
Other DBs
NCBI-GeneID: 108449885
NCBI-ProteinID: NP_001316841
ZFIN: ZDB-GENE-070117-2515
Ensembl: ENSDARG00000116511
UniProt: P0DOC7
Position
13:52006945..52014610
AA seq 647 aa
MSCGDSGIRRILRASKRFRSTKGASKARRDQMNSEIRNLRALLPISPEHRLSYLHSMSIT
CTYIRKSVELRGVCEESTVFSAVNGCVPQDCALQDCALQECVLQECVLQECVLQECVLQA
LPGFIVAFTTDGKLLYVSENVHEYLGLSMVDVLQSDSFFDMLDRSDVEAVRSVLADASPS
GERWVVCRMLVSKAMRLRSSCCPLLVRIRLRDGVCVSLCRPTADRLPARNADFHTHHSAD
MRLASASSSVLFHLGFSADELIGRSWYELLHPDDLRHAADRHAAILAAATADAEMLIRVQ
CKDLSWVWMYTHASATAERDAISCSNYMISEAEAVYLQQRLSSSSSSSTSSSSSSASPQC
SSVSDSSDAHSAHTLFCTPPYSPTSSQCSDFLSEGYGSLEALVDSAFCSPPYPPLFPNPC
CTPTVCPPDTALDPARLCPPDSALVPAALCPPDAALDPTQLCPPGAALDPTLLCPPGAAL
DPTQLCLPDGALVPAVFCPPNGALVPARLCPSDAALVPAALGRPDAALVPVCRPLQVCEC
PLDGAVPLEDLSMFPLPQGGGSRLMPPEASPTTHTHFSYDAAQQAGIGTLAMQIHTLICS
FDAYSAARHTHSHHTSCWAPEPLLDEGIIDSILRELDSTHTDAHTLI
NT seq 1944 nt   +upstreamnt  +downstreamnt
atgagctgcggagactcgggcatcaggaggatcctccgcgcgtccaagcgcttcaggtcc
accaaaggagcatctaaggcgcggcgtgatcagatgaacagtgagatacggaacctgcga
gcgctgctgcccatcagcccagagcacagactctcatacctgcacagcatgagcatcacc
tgcacctacatcaggaagagtgtggagctgagaggtgtgtgtgaggaatccacagttttt
tctgccgtgaatggatgtgtcccgcaggactgtgctctacaggactgtgctctacaggag
tgtgttctgcaggagtgtgttctgcaggagtgtgttctgcaggagtgtgttctgcaggct
ctgccggggtttatcgttgcctttaccacagatggaaaactgctgtatgtgtctgagaac
gtacacgagtatctgggtctgtccatggtggacgttctccagagcgactctttcttcgat
atgctggaccgcagtgatgtggaggcggtgaggagtgtgttagctgacgccagtccttca
ggagagcggtgggttgtgtgtcgtatgctggtgtctaaagcgatgcgtctgcggagctcc
tgctgccccctgctggtgcggatccgtctgcgggacggagtgtgtgtgtcgctctgcaga
cccaccgctgaccggctgccggcgcgcaacgctgacttccacacacaccacagcgcagac
atgaggctcgccagcgcatcctccagtgtgttgttccacctgggcttctcagcggacgag
ctgattggtcgatcctggtacgagctcctgcaccccgacgacctccgacacgctgctgac
cgccacgccgcaatccttgcagccgccacagcagacgcagagatgctgatccgggttcag
tgtaaggatctgtcctgggtgtggatgtacacacacgcatcagcaacagcagagcgggac
gcgatcagctgctccaactacatgatcagtgaagcagaggcagtgtatctgcagcagaga
ctctcctcctcctcctcctcctccacctcctcctcctcctcctctgcctctcctcagtgt
agctccgtctcggacagcagtgatgcccacagcgcacacacactcttctgcacgccgccc
tacagccccacttcctctcagtgctctgacttcctgtctgaaggttatggctctctggag
gcgctggtggattctgccttctgctctccgccgtacccgccgctgttccccaacccatgc
tgcacccccactgtctgcccaccggacactgccctggaccccgctcggctctgcccgcca
gattctgccctggtccccgctgcgctctgtccgccggacgctgccctggaccccactcag
ctctgcccgccgggagctgccctggaccccactctgctctgcccgccgggagctgccctg
gaccccactcagctctgcctgccggacggtgccttggtccctgctgtgttctgcccgccg
aacggtgccctggtccctgcccggctctgcccgtcagatgctgccctggtccccgctgca
ctcggtcggccggacgctgccctggtgcctgtgtgtcggccactgcaggtgtgtgagtgc
cctctggatggcgctgtgccgctggaggacctcagcatgttcccgctgccgcagggcgga
ggctctcgtctgatgccgcctgaagcatcacccactacccacacacacttctcgtatgat
gcagcacagcaggcggggatcggcacgttggcaatgcagatacacacactcatctgcagc
ttcgatgcgtacagcgccgcacgacacacacactctcaccacacctcctgctgggcacca
gagccactgctggacgagggcatcatcgacagcatcctcagagagctggacagcacacac
actgatgcacacacactgatctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (50)   
   KEGG ORTHOLOGY (1)   
   RefGene (44)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (66)   

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