KEGG   Danio rerio (zebrafish): 286777
Entry
286777            CDS       T01004                                 
Symbol
ddx54
Name
(RefSeq) ATP-dependent RNA helicase DDX54
  KO
K14808  ATP-dependent RNA helicase DDX54/DBP10 [EC:5.6.2.7]
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:dre03009]
    286777 (ddx54)
Enzymes [BR:dre01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     286777 (ddx54)
Ribosome biogenesis [BR:dre03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    286777 (ddx54)
SSDB
Motif
Pfam: DEAD Helicase_C DBP10CT ResIII
Other DBs
NCBI-GeneID: 286777
NCBI-ProteinID: NP_775375
ZFIN: ZDB-GENE-021220-2
Ensembl: ENSDARG00000105286
UniProt: Q8JGR2
Position
5:72194489..72205843
AA seq 862 aa
MAQRKKKLMRRKKSGANRDHELQSDDEEFEVAAGVKDDENTTVRRLPRFPASSECVSDVE
LDTRELVRAQNKKKKKSGGFQSMGLSYPVYKGIMKKGYKVPTPIQRKTIPVILDGKDVVA
MARTGSGKTAAFLVPLFEKLKAPQAQTGARALILTPTRELALQTMKFTKELGKFTGLRTA
LILGGDSMDDQFAALHENPDIIIGTPGRLMHVIQEMNLKLQSVEYVVFDEADRLFEMGFA
EQLQEIIRRLPDARQTLLFSATLPKLIVEFARAGLTEPVLIRLDVDTKLSEQLKLSFFSL
RLDDKPALLLHLLRNVVKPQEQTVVFVATKHHVEYLKELLSAEGVDCSCIYSALDQTARK
ISIGRFVHRKVMLLLVTDVAARGIDIPLLDNVINYNFPCKPKLFLHRVGRVARAGRGGTA
YSLVCPDEVPYLYDLHLFLGRPMQLAHPEHTQEADGVFGRVPQSVLDDEECQLITAHQNS
LDLQNLRRVSENAYKQYLKSRPVPSAESIKRSRNTQLTDMAVHPLLGCGLEKMELDRLLM
VDTIKGYKAKSTIFEINSSNKTSASEVMRAKRSRDRQRVEKFSRARAELRAEPGAGLRAE
PPVHRETQEEDEEEQEELSTVFSEVVGGKRRRPDAEPHTHKSKKSRTAGRDQEFYIPYRP
KDFNSERGLSLDSGAGSFEQQASSAVLDLIGDESNTLNQHKSLMKWDRKKKRFVRDTGKE
DKHKKIRTESGQLIRGHKKKKSFYEEWKKKYKVEGGASDSDGEGGGAQRGRGSAGRRGRG
RGRSAAGSQATPAQHQGGSGVRSELKNRQQILKQRKRKAKQQFLQSGGMKKLRNKGKQRL
REVMKSGFGRGAVKKGKMRKKL
NT seq 2589 nt   +upstreamnt  +downstreamnt
atggcccagagaaagaaaaagctgatgaggaggaagaaaagcggcgcaaaccgcgatcac
gagctccagtccgacgatgaagagtttgaggtggccgcaggagtcaaagatgacgaaaat
accacggtcaggaggcttcctcggtttccggcctcgtctgagtgcgtgtctgacgtggag
ctggacaccagagagctggtcagagctcagaacaagaagaagaagaaatctggaggcttt
cagtctatgggtctcagctatccggtgtataaaggcatcatgaagaagggctataaagtg
cccacacccatccagaggaagacgatcccggtgattctggacggtaaggatgtggtggcg
atggcccgcaccggcagcggtaagactgcagcgttcctcgttcccctgtttgagaagctg
aaggctccgcaggcacagacgggggctcgggcactgatcctcacacccacccgagagctc
gccctgcagaccatgaagttcaccaaagagctggggaaattcactggtctgagaacagcg
ctcattctcggtggagacagcatggatgatcagttcgctgctcttcacgagaacccagac
atcatcatcggtactcctggtcgtctgatgcacgtcatccaggagatgaacctgaagctg
cagtcggtggagtatgtggtgttcgacgaggccgacagactgtttgagatgggctttgcg
gagcagcttcaggagatcatcagacgtcttccagacgcccggcagacgctgctgttctcc
gctacgcttcccaaactcatcgtggagttcgccagagccggtctgacggagccggtcctc
attcgtctggatgtggacactaaactgagtgaacagctgaagctgtcgttcttctctctg
cgtctggatgataagccggctcttctgctgcacctgctgaggaacgtggtgaagccgcag
gagcagacggtggtgttcgtggccactaaacatcatgtggagtatctgaaggagctgctg
tcagcggagggtgtggactgctcctgcatctacagtgctctggatcagacggctcgtaag
atcagcatcggtcgctttgttcatcgtaaggtgatgctgctgctggtgacggatgtggcg
gcgcgcggtatcgacatccccctgctggacaacgtcatcaactacaacttcccctgcaaa
cccaagctcttcctgcacagagtcggtcgtgtggctcgcgctggtcgagggggaacagca
tacagtctggtgtgtcctgatgaggtgccttacctgtatgacctgcacctgtttctgggt
cgacccatgcagctcgcacaccccgaacacacacaagaagcggacggtgtgttcggccgt
gttcctcagagtgttctggatgatgaggagtgtcagctgatcacggcgcatcagaactct
ctggacctgcagaatctcagacgcgtgtcagaaaacgcctacaagcagtacctgaagtcc
agacccgtcccgtctgcagagtccatcaagcgcagccgcaacacacagctcacagacatg
gcggtacacccgctgctgggctgtgggctggagaagatggaactggatcgactgctgatg
gtcgacaccatcaagggctacaaggccaaatctactatttttgagatcaactccagcaat
aagacgagcgctagcgaggtgatgcgcgccaaacgctcccgggaccgccagcgggtggag
aagttcagcagagcaagagcagagctgagggcggagccaggggcgggactgagggcggag
ccaccagtgcacagagagacacaggaggaagacgaggaggagcaggaggagctgtcgacg
gtgttctctgaggtggttggaggtaagagacggaggccggatgcggagccgcacacacac
aagagcaagaagagcagaacagcgggccgagaccaggagttctacatcccatacagaccc
aaagacttcaactcagagcgcgggctcagtctggactctggtgcgggctcgtttgagcag
caggcctcctctgcagttctggatctgattggagatgagagcaacacattaaaccagcac
aagagcctgatgaagtgggaccgcaagaagaagcgcttcgtccgtgacaccggcaaagag
gacaaacacaagaagatcaggacggagagcggacaactgatcagaggacacaagaagaag
aagagcttttatgaagagtggaagaagaagtataaggtggagggcggagcttcagactct
gatggagaagggggaggagctcagagggggcggggctctgcaggtcgtcggggtcgtggt
cggggtcgctctgcagcaggttcccaggctacgccagcgcagcatcagggcggttcaggt
gttcgctcggagctgaagaaccggcagcagatcctgaagcagcgcaagaggaaagcaaag
cagcagttcctgcagagcggaggcatgaagaagctcagaaacaagggaaaacagcgcctc
cgagaggtcatgaagtccggcttcggccgcggagcagtcaagaagggcaagatgaggaag
aaactttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (40)   

Download RDF
DBGET integrated database retrieval system