KEGG   Danio rerio (zebrafish): 321555
Entry
321555            CDS       T01004                                 
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A
  KO
K12821  pre-mRNA-processing factor 40
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    321555 (prpf40a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dre03041]
    321555 (prpf40a)
Spliceosome [BR:dre03041]
 Complex A
  U1 snRNP components
   U1 related factors
    321555 (prpf40a)
 Complex B
    321555 (prpf40a)
SSDB
Motif
Pfam: FF WW Glyco_hyd_101C PTPlike_phytase
Other DBs
NCBI-GeneID: 321555
NCBI-ProteinID: NP_938170
ZFIN: ZDB-GENE-030131-274
Ensembl: ENSDARG00000058467
UniProt: Q7ZUE4
Position
9:4675193..4721974
AA seq 851 aa
MMGPPGIPPHFPPMGMPPMGQRPPSLAPMPPGIMPPMMPPMGAPPIGQMPAMMPPMMPGM
MMPPRLPAASIQPTGPPGVSPVEAAAPAAPGTTSTTSTESSPDEQPKKKSVWTEHKSLDG
KIYYYNTETKQSTWEKPDELKSPAEQMLSKCPWKEYKSDTGKPYYYNSQTKESRWTKPKE
LEDLEAMIKAEENGTADVVAPGTTPALTAQNESSVTVAPVAETEATMATGTIEEQPSHVP
AQVAEVSSDVAVNSTEETPSVETQPSNDVSKEERPELVKKVYKWNTKEEAKQAFKELLKE
KGVSSNASWEQAMKLIINDPRYSALPKLSEKKQAFNAYKVQTEKEEKEEARIKYKESKET
FQRFLENHEKMTSTTRYKKAEQMFGDQEVWSCVPERDRLEIYEDVLFYLAKKEKEQAKQL
RKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAEDEELQNMDKEDALICFEEHIR
ALEKEEEDEKQKTLLRERRRQRKNRESFQKFLDELHDHGQLHSMSAWMEMYPTISADIRF
SNMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDILKDKGFLVEINTGFEDFGSVISSD
KRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKEAAFKSMLKQATPPLEPEAT
WEGVRERFLKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKTKKHSKKSKKHHRKRS
RSRSGSESEEDEYHTKKKKRSTSKSPSEHSSSGESERSYKKSKKHKKKGKKRRHKSGSPE
SEGERERKGREKDKDKENDKSRAKLRGESKQKSPKRKSAKEEGGWDTSGSELSEGELEKR
RRTLLEQLDAP
NT seq 2556 nt   +upstreamnt  +downstreamnt
atgatggggccaccaggaatcccgcctcacttccctccaatgggaatgccacccatgggc
cagaggccgcccagcctggcccccatgcccccgggaataatgccacccatgatgcctcca
atgggcgctccaccaattggacagatgccagccatgatgccaccaatgatgcctggaatg
atgatgccacctcgtctgccagctgcatcaatccagcctacaggaccgcctggtgtaagt
ccagtggaggctgcagctccggctgctcctggaacaaccagcaccacatcaaccgagtct
tcacctgatgaacagccaaaaaagaagtcagtgtggaccgagcacaaatctctggatgga
aaaatatactactacaacacagagaccaaacaatccacctgggagaaaccagatgaactc
aaatcacccgcagagcaaatgttgtcaaaatgcccatggaaagagtataagtcagacacc
ggaaagccctattactataactcccagaccaaagagtctcgctggactaaacccaaagaa
ctggaggacctggaagcgatgataaaggcagaggaaaatgggacggctgatgttgtggct
cctggcaccacccctgctctcacagctcagaatgagtcttctgttactgtggcgccggtt
gctgagacggaggctaccatggcgacgggcaccatcgaggaacagccttctcacgtgcct
gcacaggttgctgaggtcagcagtgacgtcgctgtgaactccactgaggaaacgcccagc
gtggagacccagcctagcaatgacgtttcaaaggaggagagacctgagctggtgaagaaa
gtttacaagtggaatacaaaagaggaggcgaagcaggcctttaaagaactcctgaaagaa
aagggcgtttcttccaatgcatcatgggagcaggcaatgaagctgataattaatgaccct
cgttacagtgctctgccaaagctcagtgagaagaaacaggcgttcaatgcttataaagtc
cagacagagaaagaggaaaaggaagaagccagaataaaatacaaggagtctaaagagact
ttccaacgcttcctggagaaccacgagaagatgacgtcaaccacacgatacaagaaagca
gagcagatgtttggagatcaagaggtttggtcgtgtgttccagagagagaccggctggag
atctatgaagatgtgctcttttatttggcaaagaaagagaaggaacaagctaaacagctg
aggaagaggaactgggaagcactgaagaacattctggacaatatggccaatgtgacgtac
agaacaacgtggtctgaggcgcaacagtacctgctggacaatccaacatttgctgaagac
gaggagctacagaacatggacaaggaagatgcgctgatctgttttgaggaacacatccgt
gctcttgagaaagaggaagaagatgagaagcagaaaactctgctgcgcgagagacgtcga
cagcgcaagaacagagagtcttttcagaaattcctggatgagcttcatgatcatgggcag
ctgcactccatgtctgcctggatggagatgtacccaaccatcagtgccgatattcgcttc
agcaacatgctgggccagccaggctccacgcctctggacttatttaagttttatgtggag
gatctgaaagctcgttaccatgatgagaagagaatcattaaagacatcctgaaggataaa
ggtttcctggtggagatcaacacaggctttgaggactttggctcagtgatcagctctgat
aaacgcgccaccacgcttgatgcgggaaacatcaaactggccttcaacagtttgcttgag
aaggctgaagcacgagagcgggaaagagaaaaagaggaggccagaaagatgaagaggaag
gaagcggcatttaagagcatgttaaaacaggccacaccccctctagagcccgaggccacg
tgggagggagtacgagagcgcttcctaaaagagcctgcttttgaagacatcacgctggag
tccgagaggaagagaatattcaaagacttcatgcatgttctagagcacgagtgtcagcat
catcactccaagacgaaaaaacactccaagaaatccaagaaacaccacaggaaacgttcc
cgatctcgatcaggctcggagtcagaggaagatgagtatcacacgaagaagaagaaacgt
tcaacatctaaatctccatctgagcactcgtcctctggggagtcagagagaagttataag
aaatcgaagaaacacaagaagaagggaaagaaaagacgacacaagtctggttcccctgag
tctgaaggagagagagagcggaaaggaagagagaaggacaaagataaagagaacgacaaa
tccagagccaagctgcgtggagaatccaaacagaaatcccccaaaagaaagagtgctaaa
gaagagggtggatgggatacgtctggcagtgaactgagtgaaggagagctggagaagagg
cggcgcacacttctagagcagctggatgctccgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (55)   
   KEGG ORTHOLOGY (1)   
   RefGene (49)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (70)   

Download RDF
DBGET integrated database retrieval system