KEGG   Danio rerio (zebrafish): 393876
Entry
393876            CDS       T01004                                 
Symbol
prdm9
Name
(RefSeq) histone-lysine N-methyltransferase PRDM9
  KO
K20796  [histone H3]-lysine4 N-trimethyltransferase PRDM7/9 [EC:2.1.1.354]
Organism
dre  Danio rerio (zebrafish)
Pathway
dre00310  Lysine degradation
dre01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:dre00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00310 Lysine degradation
    393876 (prdm9)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:dre03000]
    393876 (prdm9)
   03036 Chromosome and associated proteins [BR:dre03036]
    393876 (prdm9)
Enzymes [BR:dre01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.354  [histone H3]-lysine4 N-trimethyltransferase
     393876 (prdm9)
Transcription factors [BR:dre03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 PRDM
    393876 (prdm9)
Chromosome and associated proteins [BR:dre03036]
 Eukaryotic type
  Meiosis-specific proteins
   DSB formation-related proteins
    393876 (prdm9)
  Histone modification proteins
   HMTs (histone methyltransferases)
    HKMTs (histone lysine methyltransferases)
     393876 (prdm9)
SSDB
Motif
Pfam: zf-C2H2 PRDM2_PR zf-C2H2_4 zf-H2C2_2 SET zf-C2H2_3rep Zn-ribbon_8 zf-C2H2_5 AT_hook zf-met
Other DBs
NCBI-GeneID: 393876
NCBI-ProteinID: NP_957196
ZFIN: ZDB-GENE-040426-1319
Ensembl: ENSDARG00000005382
UniProt: Q6P2A1
Position
12:complement(9781524..9790464)
AA seq 853 aa
MSLSPDLPPSEEQNLEIQGSATNCYSVVIIEEQDDTFNDQPFYCEMCQQHFIDQCETHGP
PSFTCDSPAALGTPQRALLTLPQGLVIGRSSISHAGLGVFNQGQTVPLGMHFGPFDGEEI
SEEKALDSANSWVICRGNNQYSYIDAEKDTHSNWMKFVVCSRSETEQNLVAFQQNGRILF
RCCRPISPGQEFRVWYAEEYAQGLGAIWDKIWDNKCISQGSTEEQATQNCPCPFCHYSFP
TLVYLHAHVKRTHPNEYAQFTQTHPLESEAHTPITEVEQCLVASDEALSTQTQPVTESPQ
EQISTQNGQPIHQTENSDEPDASDIYTAAGEISDEIHACVDCGRSFLRSCHLKRHQRTIH
SKEKPYCCSQCKKCFSQATGLKRHQHTHQEQEKNIESPDRPSDIYPCTKCTLSFVAKINL
HQHLKRHHHGEYLRLVESGSLTAETEEDHTEVCFDKQDPNYEPPSRGRKSTKNSLKGRGC
PKKVAVGRPRGRPPKNKNLEVEVQKISPICTNCEQSFSDLETLKTHQCPRRDDEGDNVEH
PQEASQYICGECIRAFSNLDLLKAHECIQQGEGSYCCPHCDLYFNRMCNLRRHERTIHSK
EKPYCCTVCLKSFTQSSGLKRHQQSHLRRKSHRQSSALFTAAIFPCAYCPFSFTDERYLY
KHIRRHHPEMSLKYLSFQEGGVLSVEKPHSCSQCCKSFSTIKGFKNHSCFKQGEKVYLCP
DCGKAFSWFNSLKQHQRIHTGEKPYTCSQCGKSFVHSGQLNVHLRTHTGEKPFLCSQCGE
SFRQSGDLRRHEQKHSGVRPCQCPDCGKSFSRPQSLKAHQQLHVGTKLFPCTQCGKSFTR
RYHLTRHHQKMHS
NT seq 2562 nt   +upstreamnt  +downstreamnt
atgtcgctcagtcccgatttgcccccaagcgaggagcagaatttagagatacagggatct
gctactaattgttattctgtggtaataattgaagaacaggatgacacctttaatgaccaa
cctttctattgtgagatgtgtcaacaacacttcatagatcagtgtgagacccatggtcca
ccttcgtttacatgcgactctccagcggctttgggtacacctcaaagagctctgctaaca
ctgccacaaggcttggttattggtcgatcaagcatctctcatgcaggacttggggttttc
aaccagggccaaactgttcctctagggatgcattttgggccttttgacggtgaagagatc
agtgaggaaaaggcactggatagtgccaactcttgggtaatttgcagaggaaataatcag
tatagttacatagatgcagagaaagacactcactctaactggatgaagtttgttgtgtgc
tcaaggagtgagacggagcagaatcttgttgcgttccaacaaaatggacgtattctgttc
cgctgttgccgccccattagccctggtcaggaatttagagtttggtatgctgaggaatat
gctcaaggactcggcgccatctgggataagatctgggataataaatgcatttctcaaggt
tcaactgaagaacaggcaactcagaattgtccatgtcctttttgccattactccttccct
acccttgtttatctgcatgcgcatgtgaagcgcacgcaccctaatgagtacgcacaattc
acacagacacatccgcttgaatctgaagcccatacacccatcactgaagtagaacagtgt
cttgtggcctccgatgaagcgctttcaacacaaacgcagccggtgacagaaagtcctcag
gagcagatttcaacccaaaacggacaacccatccatcagactgaaaactcggatgagcct
gatgcatctgatatatacactgctgcaggtgaaatttcagatgaaatacatgcatgtgtt
gattgcggtcggtcgtttttgagatcttgtcatctgaagcgacatcagcgcaccattcac
tccaaagagaagccttattgctgcagccaatgtaagaagtgctttagtcaagcaacaggg
ctgaaaagacaccagcacacccaccaggaacaagaaaagaacattgaaagtccagacaga
ccttctgatatatacccctgcactaagtgcaccttgtccttcgtggcgaagatcaattta
catcaacatctcaaacgacatcaccacggagagtacctccgattagttgagagtggctca
cttactgcagaaaccgaagaagatcatacagaagtgtgttttgacaagcaggatccaaac
tatgaacctccttctcgaggaaggaagtccacaaagaactctttaaaaggcagaggttgt
cctaaaaaagtggctgtaggcaggcctcgaggacgaccacctaaaaacaagaatctggag
gttgaagtgcagaagatttctcccatctgcactaactgcgaacagagcttctctgatttg
gagacgctgaaaacgcatcagtgtccaagacgtgatgatgagggtgataatgtagagcat
ccacaagaagcttctcagtatatctgtggcgaatgcattcgagctttcagcaatttggat
cttctcaaagcccacgagtgcatccagcaaggggaaggatcttactgttgcccccattgc
gacctttatttcaaccgcatgtgcaatctgcgtcgccatgagagaacgatccactctaag
gagaagccctattgctgcacggtgtgcctcaagtctttcactcagtcttctggattgaaa
cgccaccagcaaagccacttacgccgtaaatcccaccgccagagctcagctctgttcact
gccgccatctttccctgcgcatactgcccgttctccttcactgatgagcgatatctttac
aaacacatccggcgccatcacccggagatgagcctcaaatatctgagcttccaagaaggg
ggcgttttatcagtcgaaaagcctcacagctgcagtcagtgctgcaagagcttcagcacg
atcaagggttttaagaatcacagctgcttcaagcaaggggagaaggtgtatctgtgcccg
gactgcgggaaggccttcagttggtttaacagcctcaagcagcaccagcgaatccacacc
ggggaaaagccttacacctgttcgcagtgcggaaagagtttcgtccactccgggcaactg
aatgtgcacctccgtactcacacaggcgaaaaacctttcctctgttctcagtgcggcgaa
agcttcaggcagtctggagatctgaggaggcacgagcagaagcattctggtgtccgtccg
tgccagtgtccggattgtgggaaaagctttagtcggccgcagagtctcaaagctcatcaa
cagcttcacgtcggcactaaacttttcccctgcactcagtgtggaaaaagctttactcgg
aggtaccacctcacccggcatcatcaaaaaatgcactcttga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (4)   
   KEGG ENZYME (1)   
   KEGG REACTION (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (82)   
   KEGG ORTHOLOGY (1)   
   RefGene (76)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (10)   
   Pfam (10)   
All databases (117)   

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