KEGG   Danio rerio (zebrafish): 415104
Entry
415104            CDS       T01004                                 
Symbol
ctcf
Name
(RefSeq) transcriptional repressor CTCF
  KO
K23195  transcriptional repressor CTCF
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:dre03000]
    415104 (ctcf)
   03036 Chromosome and associated proteins [BR:dre03036]
    415104 (ctcf)
Transcription factors [BR:dre03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    415104 (ctcf)
Chromosome and associated proteins [BR:dre03036]
 Eukaryotic type
  Chromatin remodeling factors
   Other chromatin remodeling factors
    415104 (ctcf)
SSDB
Motif
Pfam: zf-H2C2_2 zf-C2H2 zf-C2H2_4 zf-H2C2_5 zf-C2H2_jaz Roughex zf-met zf-C2HE zf-C2H2_6 zf-WIZ
Other DBs
NCBI-GeneID: 415104
NCBI-ProteinID: NP_001001844
ZFIN: ZDB-GENE-040624-5
Ensembl: ENSDARG00000056621
UniProt: Q6JAA4
Position
18:22286011..22293383
AA seq 798 aa
MEGGPTEAVVEDAGDAFKAKECKTYQRRREDEEVGAELLQAAVIEQAQAEVEPVVEAQQQ
LVESVVSVNSSVDMMMMETLDPALLQMKTEVMEAAVGAPVAVAGAAHEATVTTVDDTQII
TLQVVNMEEQQLGLGELQLVQVPVSAVPVTAATVEELQGTLVDATAMPKDGEPVICHTLP
LPEGFQVVKVGANGEVETVEQDELQPQDDQPPHQEEEEEMAEPQNEDPAWSKDPDYTPPV
KKVKKTKKSKLRYNTEGDKDMDVSVYDFEEEQQEGLLSEVNAEKVVGNMKPPKPTKIKKK
GVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTR
PHKCTDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQ
CSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCP
HCDTVIARKSDLGVHLRKQHSYIEQGRKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQC
DYACRQERHMVMHKRTHTGEKPYACSQCEKTFRQKQLLDMHFRRYHDPNFVPTSFVCTKC
GKTFTRRNTMARHAENCTGMDSADGENGTPPKRGRGGRKRKMRSRKDDDDDDDSDEHGEP
DLDDIDEEDEDDLLDEDQMGLLDQAPPSVPIPAPAEPPIKRKRGRPPKNAPKVSPTKSIT
KTTTAAAIIQVEDESTGAIENIIVKKEPEGTDAVVAAQPIIEEVEAVEADVETVQLTVPE
AAPNGDLTPEMILSMMDR
NT seq 2397 nt   +upstreamnt  +downstreamnt
atggaagggggaccgactgaggccgtggtggaagatgcaggggatgctttcaaggccaag
gagtgcaagacataccaaaggaggcgggaagatgaggaggtgggagccgagctgctgcag
gctgctgtgattgagcaagcacaggctgaagtagagcctgtggtggaggcccagcaacag
ctggttgagagtgtagttagtgtcaacagcagcgtggacatgatgatgatggaaaccctg
gaccctgccttgctgcagatgaagacagaagtcatggaggctgccgttggggcacctgtc
gctgtggctggtgctgctcatgaagccacagtcactacagtcgatgatacacagatcatc
accctgcaggtggtgaatatggaggagcagcagttgggcttgggagagctgcagctggtg
caggtgcctgtttctgctgtgcctgtcaccgccgccactgtggaagagctgcaggggaca
ctggtggatgcaactgccatgcctaaagatggggagccggtcatctgtcacaccctgcca
ttgcctgagggctttcaggtggtcaaagtgggtgcaaacggagaagtagaaactgtggag
caagatgagctccagccccaagacgatcagcctccgcatcaggaggaggaagaagaaatg
gctgaaccccaaaatgaagaccccgcctggtccaaagatcccgactacacacctcctgtt
aaaaaggtcaagaagacgaagaagagcaagctgcgctacaacacagagggtgataaagac
atggatgtgtctgtgtatgatttcgaggaggagcagcaggagggtctgctttctgaagtc
aatgctgagaaagttgtgggtaacatgaaaccacccaaaccaaccaaaatcaagaagaaa
ggtgttaagaagacattccagtgtgagctgtgcagttacacttgcccacgccggtccaat
ctggaccgccacatgaagagccacacagacgagaggcctcacaagtgccatctttgcgga
cgagcatttaggactgtgactttgctgaggaaccatcttaatacccacacaggcaccaga
ccacataagtgcactgactgtgacatggcctttgtcaccagtggagagctggtgcgacac
agacgctacaagcacactcatgagaaaccgttcaagtgctctatgtgtgactacgccagt
gtagaggttagcaagctgaagcgccacattcgctcccacacaggagagcgtccgttccag
tgcagtctgtgcagttatgccagcagagatacatacaagctgaagagacacatgaggacc
cactcaggagagaagccctatgagtgctatatctgtcatgcacggtttacccagagtggc
accatgaagatgcacattctgcagaagcacacagaaaatgtggcgaaatttcactgccct
cactgcgacaccgtcattgcccgcaagagtgatcttggtgtgcatctccgtaagcagcat
tcctacattgaacagggcagaaagtgccgttactgtgatgctgtgttccacgagcgctac
gctcttatccagcatcagaaatcccacaaaaatgagaaacgcttcaagtgtgatcagtgt
gactatgcatgccgccaggagcgtcacatggtcatgcacaagcgcacacatactggggag
aagccatatgcctgcagccaatgtgagaagacctttaggcagaaacagctgttggacatg
cactttcgccgctatcatgaccccaactttgtacccacatcctttgtatgcaccaagtgc
ggaaagaccttcactcgcaggaataccatggcaagacatgcagagaactgcactggtatg
gattctgctgatggagagaacggaactccacccaaaaggggccgtggaggcagaaagagg
aagatgcggtctagaaaggatgatgacgatgatgatgacagtgatgagcatggtgaacct
gaccttgatgacattgatgaagaggatgaggatgaccttcttgatgaagaccagatgggt
ttgctagaccaggctccacccagtgttccaatccccgcaccagctgagccaccaatcaag
aggaaacggggcagaccccctaagaacgcacccaaggtctctcctaccaagtccattacc
aaaaccaccacagctgctgccattatccaggtggaggatgaaagcacaggggccattgag
aacatcattgtgaagaaggagccagagggcactgacgcagttgtagctgcccagccgatc
atagaggaagtggaggcggttgaggccgatgtagaaacggtgcagttaacagtcccagaa
gctgcacctaacggtgatcttactcctgaaatgatccttagcatgatggaccggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (18)   
   RefSeq(nuc) (2)   
   GenBank (8)   
   EMBL (8)   
Protein domain (10)   
   Pfam (10)   
All databases (64)   

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