KEGG T01004: 415104

Danio rerio (zebrafish): 415104

Entry

415104            CDS       T01004

Symbol

ctcF

Name

(RefSeq) transcriptional repressor CTCF isoform X1

K23195

transcriptional repressor CTCF

Organism

dre Danio rerio (zebrafish)

Brite

KEGG Orthology (KO) [BR:dre00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:dre03000]
    415104 (ctcF)
   03036 Chromosome and associated proteins [BR:dre03036]
    415104 (ctcF)
Transcription factors [BR:dre03000]
Eukaryotic type
  Zinc finger
   Cys2His2 others
    415104 (ctcF)
Chromosome and associated proteins [BR:dre03036]
Eukaryotic type
  Chromatin remodeling factors
   Other chromatin remodeling factors
    415104 (ctcF)

SSDB

Motif

Pfam:

zf-H2C2_2 zf-C2H2 zf-C2H2_4 zf-C2H2_16 zf-H2C2_5 zf-C2H2_jaz zf-C2H2_REST Zf-C2H2_ZNF451_C zf-C2H2_ZN142 zf-C2H2_7th_ZNF462 Roughex zf-met zf-C2HE Zf-C2H2_ZNF451 zf-C2H2_6 zf-C2H2_15

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

ZFIN:

Ensembl:

UniProt:

Position

18:23676525..23683897

AA seq 809 aa
MKCSILVQVLPMEGGPTEAVVEDAGDAFKAKECKTYQRRREDEEVGAELLQAAVIEQAQA
EVEPVVEAQQQLVESVVSVNSSVDMMMMETLDPALLQMKTEVMEAAVGAPVAVAGAAHEA
TVTTVDDTQIITLQVVNMEEQQLGLGELQLVQVPVSAVPVTAATVEELQGTLVDATAMPK
DGEPVICHTLPLPEGFQVVKVGANGEVETVEQDELQPQDDQPPHQEEEEEMAEPQNEDPA
WSKDPDYTPPVKKVKKTKKSKLRYNTEGDKDMDVSVYDFEEEQQEGLLSEVNAEKVVGNM
KPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLL
RNHLNTHTGTRPHKCTDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRH
IRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQK
HTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGRKCRYCDAVFHERYALIQHQKSH
KNEKRFKCDQCDYACRQERHMVMHKRTHTGEKPYACSQCEKTFRQKQLLDMHFRRYHDPN
FVPTSFVCTKCGKTFTRRNTMARHAENCTGMDSADGENGTPPKRGRGGRKRKMRSRKDDD
DDDDSDEHGEPDLDDIDEEDEDDLLDEDQMGLLDQAPPSVPIPAPAEPPIKRKRGRPPKN
APKVSPTKSITKTTTAAAIIQVEDESTGAIENIIVKKEPEGTDAVVAAQPIIEEVEAVEA
DVETVQLTVPEAAPNGDLTPEMILSMMDR

NT seq 2430 nt +upstreamnt +downstreamnt
atgaagtgttccatattggtgcaggtattacccatggaagggggaccgactgaggccgtg
gtggaagatgcaggggatgctttcaaggccaaggagtgcaagacataccaaaggcggcgg
gaagatgaggaggtgggagccgagctgctgcaggctgctgtgattgagcaagcacaggct
gaagttgagcctgtggtggaggcccagcaacagctggttgagagtgtagttagtgtcaac
agcagcgtggacatgatgatgatggaaaccctggaccctgccttgctgcagatgaagaca
gaagtcatggaggctgccgtcggggcacctgtcgctgtggctggtgctgctcatgaagcc
acagtcactacagtcgatgatacacagatcatcaccctgcaggtggtgaatatggaggag
cagcagttgggcttgggagagctgcagctggtgcaggtgcctgtttctgctgtgcctgtc
actgccgccaccgtggaagagctgcaggggacactggtggatgcaactgccatgcctaaa
gatggggagccggtcatctgtcacaccctgccattgcctgagggctttcaggtggtcaaa
gtgggtgcaaacggagaagtagaaactgtggagcaagatgagctccagccccaagacgat
cagcctccgcatcaggaggaggaagaagaaatggctgaaccccaaaatgaagaccccgcc
tggtccaaagatcccgactacacacctcctgttaaaaaggtcaagaagacgaagaagagc
aagctgcgctacaacacagagggtgataaagacatggatgtgtctgtgtatgatttcgag
gaggagcagcaggagggtctgctttctgaagtcaatgctgagaaagttgtgggtaacatg
aaaccacccaaaccaaccaaaatcaagaagaaaggtgttaagaagacattccagtgtgag
ctgtgcagttacacttgcccacgccggtccaatctggaccgccacatgaagagccacaca
gacgagaggcctcacaagtgccatctttgcggacgagcatttaggactgtgactttgctg
aggaaccatcttaatacccacacaggcaccagaccacataagtgcactgactgtgacatg
gcctttgtcaccagtggagagctggtgcgacacagacgctacaagcacactcatgagaaa
ccgttcaagtgctctatgtgtgactacgccagtgtagaggttagcaagctgaagcgccac
attcgctcccacacaggagagcgtccgttccagtgcagtctgtgcagttatgccagcaga
gatacatataagctgaagagacacatgaggacccactcaggagagaagccctatgagtgc
tatatctgtcatgcacggtttacccagagtggcaccatgaagatgcacattctgcagaag
cacacagaaaatgtggcgaaatttcactgccctcactgcgacaccgtcattgcccgcaag
agtgatcttggtgtgcatctccgtaagcagcattcctacattgaacagggcagaaagtgc
cgttactgtgatgctgtgttccacgagcgctacgctcttatccagcatcagaaatcccac
aaaaatgagaaacgcttcaagtgtgatcagtgtgactatgcatgccgccaggagcgtcac
atggtcatgcacaagcgcacacatactggggagaagccatatgcctgcagccaatgtgag
aagacctttaggcagaaacagctgttggacatgcactttcgccgctatcatgaccccaac
tttgtacccacatcctttgtatgcaccaagtgcggaaagaccttcactcgcaggaatacc
atggcaagacatgcagagaactgcactggtatggattctgctgatggagagaacggaact
ccacccaaaaggggccgtggaggcagaaagaggaagatgcggtctagaaaggatgatgac
gatgatgatgacagtgatgagcatggtgaacctgaccttgatgacattgatgaagaggat
gaggatgaccttcttgatgaagaccagatgggtttgctagaccaggctccacccagtgtt
ccaatccccgcaccagctgagccaccaatcaagaggaaacggggcagaccccctaagaac
gcacccaaggtctctcctaccaagtccattaccaaaaccaccacagctgctgccattatc
caggtggaggatgaaagcacaggggccattgagaacatcattgtgaagaaggagccagag
ggcactgacgcagttgtagctgcccagccgatcatagaggaagtggaggcggttgaggcc
gatgtagaaacggtgcagttaacagtcccagaagctgcacctaacggtgatcttactcct
gaaatgatccttagcatgatggaccggtga

All links

Gene (28)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (6)   
   UniProt (2)   
   RefSeq(pep) (4)   
DNA sequence (20)   
   RefSeq(nuc) (4)   
   GenBank (8)   
   EMBL (8)   
Protein domain (16)   
   Pfam (16)   
All databases (70)   

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