KEGG   Danio rerio (zebrafish): 553807
Entry
553807            CDS       T01004                                 
Symbol
gtpbp3
Name
(RefSeq) tRNA modification GTPase GTPBP3, mitochondrial precursor
  KO
K03650  tRNA modification GTPase [EC:3.6.-.-]
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:dre03016]
    553807 (gtpbp3)
Transfer RNA biogenesis [BR:dre03016]
 Eukaryotic type
  tRNA modification factors
   Other tRNA modification factors
    553807 (gtpbp3)
 Prokaryotic type
   Methyltransferases
    553807 (gtpbp3)
SSDB
Motif
Pfam: MnmE_helical TrmE_N MMR_HSR1 RsgA_GTPase FeoB_N Dynamin_N Arf SRPRB MMR_HSR1_Xtn FtsK_SpoIIIE Ras ABC_tran DO-GTPase2 AAA_22
Other DBs
NCBI-GeneID: 553807
NCBI-ProteinID: NP_001018605
ZFIN: ZDB-GENE-050522-335
Ensembl: ENSDARG00000018650
UniProt: Q501Z5
Position
11:6010177..6037759
AA seq 500 aa
MHFISCCLRRSTVSIAVSRSLLVKRLFCSGWPGDDTIYSLSSGQGKCGVAVVRVSGPASA
LAVRRLTRSLPAPRTASLRSISHPQSKELLDRGLVLWFPGPASFTGEDSAEFHIHGGPAV
ISGVLQALGSLPGLRPAEAGEFTRRAFYAGKLDLTEVEGLSDLIHAETEAQRRQALRQMA
GDLGRIYQDWTDQLKRCLAHVEAFIDFSEDELIEDGVLNDVDRAVQQLQTDMENHLSDER
RGERLRSGVHVVIAGSTNAGKSSLLNLLTQRPAAIVSPTAGTTRDVLEVPLDIGGYPVLL
SDTAGLRDTSDSVEQEGVRRARQRVEQADLSLVVVDLTQLPSERRHVPVFLRGHLKNILE
RSSQQQQHILILNESDLVSAEQQRSIQTSLQELSGAPSACFLSCHSRDGLEELLTLLHNT
LKTLCGDPLIGSPTLTQTRHRTHLQKSIEALQQYHEYRDVDLALAAEGLRLGLLSLGRIT
GRVSPEEILDVIFRDFCIGK
NT seq 1503 nt   +upstreamnt  +downstreamnt
atgcattttataagttgttgtttgaggagaagtactgtctcaattgctgtctcaaggtct
cttttagtgaaaaggctgttttgttctggctggcctggggatgacactatctactccttg
tcgtcgggtcagggcaagtgtggggtggcggtggtccgggtcagcggtccggcttcagcg
ctcgctgttcgccgtctgacccgaagcctccccgcgcctcgaactgccagcctccgcagc
atcagccacccgcagagcaaagagctgctggaccgcggcctggtcctatggtttccaggt
cccgctagtttcactggagaggacagtgcagaatttcacattcacggtggtcctgctgtc
atcagcggggtcttgcaggcacttgggagtttgcctggcttgcggcctgcagaggcaggt
gagttcacccgacgggcgttttacgcaggaaagttggatcttactgaagttgaaggtctt
agtgatctgatccatgctgagacagaagcacagagacgacaggcgctccggcagatggca
ggagacctgggccgcatctaccaggactggacagatcagcttaaacgatgcttggctcac
gtggaggcattcatcgacttcagtgaggatgaactcatagaggatggagtcttgaatgac
gtggacagagccgttcagcagctgcagacggacatggaaaaccacctctcggatgagcgc
agaggagagcgtctgcgcagcggggttcacgtggtcatcgctggaagcaccaacgctggc
aaaagcagcctactcaacctgctcacccaacgtcctgcagccatagtgtctcctacagcc
gggaccaccagagatgtactggaggtccctctggacatcgggggctatcctgtgctgctg
agtgatacagcagggctacgggacaccagtgacagtgtggaacaggagggcgtccggcgc
gcccggcagcgggtggagcaggcggatctgtctctggtggttgtggacttgacgcagctt
ccttctgagcgccggcatgtgcccgttttcctcagaggacacttgaagaatatcctggag
cgctcctctcagcagcagcagcacatcctgatccttaacgaaagtgacctggtctctgct
gaacagcagcgcagcatccagacgtcccttcaggagctctctggtgctccttctgcatgc
tttctgtcctgccacagcagagacggcctggaggagctcctgactctattgcataacact
ctgaagaccctgtgtggtgacccgctgataggcagcccgactctgactcagactcgacac
cggactcacctgcagaagagcattgaggctttacagcagtatcatgagtacagggatgtg
gacctggcgctggcggctgaaggccttcgtttggggctcttgagcctgggcagaatcact
ggtagagttagtcctgaggaaatattagacgtcattttcagagacttctgtattgggaag
tag

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Ontology (2)   
   KEGG BRITE (2)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (14)   
   Pfam (14)   
All databases (59)   

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