KEGG   Danio rerio (zebrafish): 556410
Entry
556410            CDS       T01004                                 
Symbol
atf4b
Name
(RefSeq) activating transcription factor 4b
  KO
K04374  cyclic AMP-dependent transcription factor ATF-4
Organism
dre  Danio rerio (zebrafish)
Pathway
dre04010  MAPK signaling pathway
dre04137  Mitophagy - animal
dre04141  Protein processing in endoplasmic reticulum
dre04210  Apoptosis
dre04261  Adrenergic signaling in cardiomyocytes
dre04912  GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    556410 (atf4b)
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    556410 (atf4b)
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    556410 (atf4b)
  09143 Cell growth and death
   04210 Apoptosis
    556410 (atf4b)
 09150 Organismal Systems
  09152 Endocrine system
   04912 GnRH signaling pathway
    556410 (atf4b)
  09153 Circulatory system
   04261 Adrenergic signaling in cardiomyocytes
    556410 (atf4b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:dre03000]
    556410 (atf4b)
Transcription factors [BR:dre03000]
 Eukaryotic type
  Basic leucine zipper (bZIP)
   AP-1(-like) components, CRE-BP/ATF
    556410 (atf4b)
SSDB
Motif
Pfam: bZIP_1 bZIP_2 BCAS2 MCU
Other DBs
NCBI-GeneID: 556410
NCBI-ProteinID: NP_001096662
ZFIN: ZDB-GENE-070928-23
Ensembl: ENSDARG00000038141
UniProt: A7MBV8
Position
3:24197940..24200819
AA seq 425 aa
MSLMSSRFGLDDMEVLLWDPSSPMADPLRSILDKDEEVLPLGGAESPLSSFSSSSLPSLS
PPCTPPSPQRGEKAGLDPVSLPWLPSDELCLDNRGTDSGEDHSFSGMDWMTERIDLSEFD
LESLIDSYDSEDPPSSPEELIASLESQIDLESLPVASDNTSPSPSASVPEIDQLSNLSFT
LNTPVTTHLIPPSPCEILDSSSVVPEPQAEFEIKSEPASPVPSPSVLPPESPTDTLELGC
EVDIAEVQSPSPVELRVPKFVLSLSPTRIVFVLAPKEEVNAMATHSGEVVVESSPSPTFS
EPKTPSCPPSRSSRAKPYLSHDFKTTKNQQSESPTLTGRVKSASGSKVVVEKKKLKKMEQ
NKTAATRYRQKKRAEQETLLSECAVLEERNQELAEKAESLTKEIQYLKELMEEVKRAREN
RSSRT
NT seq 1278 nt   +upstreamnt  +downstreamnt
atgtctttgatgagctcacggtttggcctggacgatatggaggtccttctctgggaccca
tcatcaccgatggctgaccctctgcggtcaattctagataaagatgaagaggttcttcct
cttggaggtgctgaatcacccctctcatctttctcttcctcttcacttccctctctttcc
ccaccttgtactcctccctcccctcagaggggggagaaggctgggcttgatccggtgtct
ctgccctggttaccctcagatgagctgtgcctagataatcgtggcacagacagtggtgaa
gatcattcgtttagtggaatggattggatgacagaacgaattgatctgagtgagtttgat
ctggagtctttgatagactcttatgattctgaggatccacccagttctcctgaggagctc
attgcttctctggagtcacagattgacctggagtccctgcctgtagcttctgacaatact
tcaccctctccatcagcctctgtccctgaaattgatcaactctccaacctttcattcact
ttgaatactccagttactacacatctcattcccccatccccttgtgaaatcttagattcc
tcctcggtggtccctgagccccaggctgagtttgagatcaagtctgaaccagcctctcca
gtcccttcaccttcagtccttccccctgagtcccctactgacactcttgagcttggttgc
gaggtggacatagcagaagttcagagtccatcccctgtagagttgcgggttcctaaattt
gtcctctctttgtccccgacccgcattgtttttgtacttgctcccaaagaggaggttaat
gcaatggctacccattcaggtgaggtggttgtggaaagttccccaagtccaaccttctct
gaacccaaaaccccatcctgtcctccgtcccgctcttctagagcaaagccctacctttcc
cacgattttaagaccaccaaaaatcagcagtcagagtcgcctacccttacaggacgagtg
aagtcagccagtggctcaaaggttgtggttgagaagaaaaagctgaagaaaatggaacag
aacaagactgcggcaactcgctacagacagaaaaagcgtgcagagcaagagacgctcctg
tcagaatgtgcagtgctcgaggagagaaatcaagagctggcagaaaaagctgagtctctt
acaaaggagatccagtacctgaaagagctaatggaagaagtcaagagggcaagagagaac
agaagttcgagaacataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (6)   
   KEGG PATHWAY (6)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (27)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (51)   

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