KEGG   Danio rerio (zebrafish): 562601
Entry
562601            CDS       T01004                                 
Symbol
nphp3
Name
(RefSeq) nephrocystin-3
  KO
K19360  nephrocystin-3
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:dre03037]
    562601 (nphp3)
Cilium and associated proteins [BR:dre03037]
 Primary cilia and associated proteins
  Nephronophthisis-related proteins
   562601 (nphp3)
SSDB
Motif
Pfam: TPR_12 TPR_10 TPR_1 TPR_7 TPR_8 TPR_2 TPR_MalT TPR_16 TPR_14 TPR_19 TPR_11 TPR_6 NACHT AAA_16 AAA_22 KAP_NTPase 14-3-3 AAA_14 ATPase_2 Uso1_p115_C DUF2225 AAA_19 Viral_helicase1 AAA DUF4635 Pox_H7 TPR-S
Other DBs
NCBI-GeneID: 562601
NCBI-ProteinID: NP_001189370
ZFIN: ZDB-GENE-091204-117
Ensembl: ENSDARG00000078261
UniProt: P0CI65
Position
24:9612366..9664164
AA seq 1303 aa
MGTASSLVSPGEVIEDAYGGEGGEACEIPVEVKPKARLLRSSFRRGPRVIGASFKSTGSV
ELEYAAEYERLRKDYEIFRVSKNNEITSMQKKEAKLDEENKRLRAELQALQKTYQKILRE
KESALEAKYQAMERAATFEHDRDKVKRQFKIFRETKEKEIQDLLRAKRDLESKLQQLQAQ
GIQIYDPADSDSDDNHTTVTTAGTQCEYWSGGVLGSEPSMGSMMQLQQTHRGPEFAHSLI
DVEGPFANVSRDDWDAAVASLLQVSPHVSQSLWSNTVRCYLIYTHETKAELQTFIQTYSL
RLRRFCEGLGHFYLNVSFPEEKAAVFAAERRREMERSSVCVLLLKSSVSSCVVEDVEEAF
VKTPDARPLLLYLRTADRKGEKEEVSTLSPATRDLLERVNKADRSAKLKVVDHAGSVEEG
AALIFSQLERIIKQELLGLELEENGVVEEREEEDSGDVLWDLHDEQEQIEAFQQACGAAA
RFSFQKYVDRLNDMVAAPPPTPPLLVSGAPGSGKSLLLAKWIELQQKHSPNTLILYHFTG
RPLSTSTDPVLIIKRLTVKLLQHFWSISGLSMDPSKILEEFPRWLERLSARHHGNIIIII
DSIDQIQNAERHMKWLIDPLPANVRVLVSVNVETCPQAWRLWPTLHLDPLNPREVKSVIS
TECVSVDIKLSKDQEKKLEKHCRSAATCNALYVSLLARLITHFSTSWTLDRTLQQCVMCQ
DTVSLYRLGLKVALDSLNSDQEKHIMKELLCLVCASHNGISESEVLELFPDLTFPALISM
LHNLERLLIITYACGLIRFQHSQACEGVNQEFLDGDKCRGSYREKCIRFFSQQLEQDRVT
WRVADELPWLLQQQEDRSKLQMSLLNLFVSQNLYKRGHFSELLAYWQFVGKDKCSMATEY
FDALKEFEKTCESEQSMSRLANLYETLGRFLKDLGLLSQAVAPLQRSLEIRETALDPDHP
SVAQSLHQLAGVYVHWRKFGNAEQLYKQAMEICENAYGPEHSTVARELDSLSLLYQKQNK
YEQAEKLRKRSVKIRQKTARQKGHMYGFALLKRRALQLEELTLGKDSTDCAKTLNELGVL
YYLQNNLDAAKLFLTRSLEMRQRVLGPDHPDCAQSLNNLAALHSERKEYESAEELYERAL
DIRKRALAPDHPSLAYTLKHLAMLYKRRGKLEKAVPLYELALEIREKSFGPKHPSVATAL
VNLAVLYCQLKQHSDALPLYERALKVYEDSLGRLHPRVGETLKNLAVLSYEEGDFEKAAE
LYKRAMEIKEAEPSLVCGKAPSRHSSSGDTFSMRSPALPNASR
NT seq 3912 nt   +upstreamnt  +downstreamnt
atgggtacggcatcctctctggtgagccctggtgaggtgattgaagatgcgtatggtggc
gaaggaggagaagcatgcgagataccagtggaggtgaagccaaaggcacgcctgctgcgg
agctccttccgtcgtgggcctcgtgtcatcggtgccagcttcaaatccaccggatctgtg
gaactggagtacgcagcggagtatgagcgcctcaggaaagactacgagatcttcagagtc
agcaagaacaatgaaatcacctccatgcaaaagaaagaagctaagctggatgaggaaaac
aagaggttgcgggctgagctgcaggctcttcagaagacttaccagaagattcttcgagaa
aaggaaagtgccttggaagcaaaataccaagccatggaaagagctgccacttttgaacat
gacagagacaaggttaaacgacagtttaagatatttcgtgaaactaaagaaaaagaaatt
caggatttgctgcgggcaaaacgagatctggagtcaaaacttcaacagctgcaggcgcaa
ggcattcagatttatgacccagcagactcagattctgatgacaaccacaccactgttact
actgcaggaactcaatgtgaatactggagtggtggtgtgttgggcagcgagccgtcaatg
ggcagtatgatgcagttacagcagacacacaggggtccggaattcgctcacagtcttatt
gacgtggaggggccgtttgctaatgtcagcagagatgattgggatgcggcggtggccagt
cttctgcaggtttctcctcacgtctctcagtctctgtggagtaacactgtccgctgctac
ctcatatacacacacgagaccaaagcagagctgcagactttcattcagacttattcttta
aggcttcggaggttttgtgaaggtttgggtcatttttacctgaacgtgtcatttcctgag
gagaaggctgctgtgtttgctgctgaacgcagacgagagatggagaggagctctgtgtgt
gtgctgcttctcaagtcctcagtgtccagctgtgttgtggaggatgttgaggaagcgttt
gtgaagaccccggatgctcgacctctcttgctgtatttgcgaactgccgacagaaaaggt
gaaaaggaagaggtgtctactctcagcccagccaccagagacctgctagagagagtgaac
aaggctgacagaagtgccaaacttaaggtagtggatcacgctgggtctgtggaggaagga
gctgctcttatcttctctcagctggaaagaatcataaaacaagagttgttgggattggag
ttagaggagaatggagtggtggaggaaagagaagaggaagactctggtgatgtgctttgg
gatcttcatgatgagcaggagcagatagaggcatttcagcaagcttgcggcgctgctgcc
agattcagctttcaaaagtatgttgacagactcaatgacatggtagctgcccctccaccc
actcctccgctgctggtatctggtgcacctggatcaggcaaatcccttttgctggctaaa
tggatagagttacagcagaaacactctcccaacaccctcatcctttatcattttacggga
cgtcctctctctaccagcacagatcctgtgcttatcattaaacgcctcacagtaaagctc
ctccagcatttctggtctatttccggcctttcaatggacccttcgaagatcctcgaagag
ttcccacgctggctagagcgactgtctgcacgtcaccatggaaacatcataatcatcatt
gattccattgaccaaatacagaatgctgagcgccacatgaaatggttgattgatccgctt
cctgctaatgtgcgagtgctggtgtcggttaatgtggagacctgcccacaagcatggaga
ttgtggcccacactgcacctagatccactcaatcccagagaggtaaagagtgtcatcagc
acggagtgtgtgagcgtggatatcaaactcagtaaagatcaggagaagaagctggagaaa
cactgtcgttcagcagcaacatgcaacgcactctatgtctcactactggccagactcatt
acacacttcagtacctcttggacattggacagaactctacaacagtgtgtaatgtgtcaa
gatacagtatcactctacagacttgggctgaaggtagcactggactcactaaacagtgat
caggaaaaacacatcatgaaagagttattgtgcctagtttgtgccagccacaacggcatc
agcgaatcagaagtcttggagctgttcccagacctgactttccctgctctcatctcaatg
ctacacaatctggagaggcttctcattattacttatgcctgtgggcttatacggtttcag
cactcacaggcatgtgaaggggtcaaccaagagtttctggatggtgacaaatgccgtgga
tcctacagagagaaatgtattcgcttcttcagccagcagttggagcaagaccgagttacc
tggagagtggctgatgagttaccatggttactgcagcagcaggaagaccgaagtaaactt
cagatgagtctgcttaacctgtttgtgtcccaaaacctctacaagaggggtcatttttca
gagcttcttgcatactggcagtttgtgggtaaggataagtgttcgatggcgacggagtat
ttcgacgcattgaaagagtttgagaagacctgtgagagtgagcagagcatgagccggctg
gccaacctatacgaaacactgggacgattccttaaagatctgggattgctcagtcaggct
gtggcccccttgcagcgctccttggagatccgtgagactgctctggaccccgaccaccca
agtgtggctcagtccctgcaccagctggcgggggtgtacgttcattggaggaaatttgga
aacgcagagcagttgtacaaacaagctatggagatttgtgaaaacgcttatggccctgaa
cacagcaccgtcgcaagagaactagactcgctttcactgctctaccagaaacaaaacaaa
tatgagcaggctgaaaagttgagaaagagatccgtcaagatcagacagaaaacagcacga
cagaaaggccacatgtatggtttcgcacttctgaagcgacgggcactgcagttagaggaa
ctgacacttggcaaagactcaacagattgtgccaagactctaaatgagctcggcgtgctg
tattacctgcagaacaacctagatgctgctaagttgttcttgaccagatctctggagatg
cgtcaacgtgtgctgggaccggaccatcccgactgcgcccagtccctgaacaacctggct
gcgctccacagcgagaggaaagaatacgagagtgccgaggagctctacgaaagagcatta
gacatccggaaacgagcgctggccccagaccacccctctctcgcttataccctcaaacac
ttagccatgctttacaaacgcagggggaagctggaaaaggcggttcctttatatgaacta
gctcttgagatcagagagaagagctttgggcccaagcaccccagtgtggccactgctttg
gttaaccttgcagtgctctactgccagctgaagcagcacagtgatgcattgcctttgtat
gaacgcgctctcaaggtttatgaggacagtcttggtcgactgcatcctcgtgttggagag
actctaaaaaacctggctgtgctcagttacgaagagggtgatttcgagaaggctgctgaa
ctctacaagcgagcaatggaaattaaagaggccgagccatctctggtgtgcggtaaggct
ccttcccgtcactcatctagtggtgacacctttagcatgcggagccccgccctgccaaat
gcatcaaggtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (27)   
   Pfam (27)   
All databases (63)   

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