KEGG   Desulfohalobium retbaense: Dret_2136
Entry
Dret_2136         CDS       T00989                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
drt  Desulfohalobium retbaense
Pathway
drt03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:drt00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Dret_2136
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:drt03019]
    Dret_2136
   03016 Transfer RNA biogenesis [BR:drt03016]
    Dret_2136
Enzymes [BR:drt01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Dret_2136
Messenger RNA biogenesis [BR:drt03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Dret_2136
Transfer RNA biogenesis [BR:drt03016]
 Prokaryotic type
  tRNA degradation factors
   Dret_2136
SSDB
Motif
Pfam: RNB OB_RNB CSD2 S1 TBPIP RNase_II_C_S1 AbiEi_4 NLE
Other DBs
NCBI-ProteinID: ACV69420
UniProt: C8X4E6
Position
2433784..2435928
AA seq 714 aa
MAKRKKKQNTSGRIQARDLLRLFREQGRPLSRREIYEQLKPGAKDKKIIRSLLDSLVDSG
KLIKIGKGYGLVEKMPLTPGRLEVQRSGVGFVIPDDKRLKDIFVAPDNFGDAWHGDRVMV
AKTPGKRGRNPEGRIARLLERGCSKLPIRVTRLLGDEAVLGRPTSTRHNFSLMVDITGLE
ERPKTRDILLVAPGEKIEPYLWGGEALEYLGAEEEAHVQEDLVKASHSVPTVFPERALHD
AQQLPDEPDPEEVARRADLRHLPFVTIDGAKAKDFDDAIHVAPTDSGYTLHVAIADVSHY
VHPGSALDKEAQQRGNSYYFPQSVEPMLPEKLSNGLCSLRPNVDRLVMVAEMDFTRQGKR
TGSRFYPAVLQSAFRLTYAQVKQAVLDRDSAARDPLTPVLPMLENAEALARSLLAMRQRR
GTMNFDLPEPEIHFNLQDEAVDIRPRVRHFGHQIIEECMIAANEAVAEFLRDREEPCMYR
VHPPPDSDKLETLFRLLAQTDLAESLPQDTSPKDLQELLTRVEGTKLEFLVNRLLLRTMM
QAYYSPKNDGHFGLASECYCHFTSPIRRYADLVVHRYLKRTLAGEDPGKTNIKRLTKVAD
HISQQERRAMEAEREILKRLTILFLRDHVGRTFTGVIASLADFGFWVELDEVLAEGMVRL
STLNDDYYVFWPEKQQIIGERTGQTFRLGQEVRVTLTDVNLDRLEVNLALEEKS
NT seq 2145 nt   +upstreamnt  +downstreamnt
atggccaagcggaaaaaaaagcagaataccagcggtcgcatccaggccagagacctgttg
cggctttttcgtgaacagggccgccccctgtcacgccgggagatctacgagcagctcaaa
cccggcgccaaagacaaaaagatcatccgttcactgctggactccctggtggacagcggc
aagctgatcaagatcggcaaagggtatgggctggtagagaagatgccgctcacgcccgga
cgtcttgaggtccagcgctccggtgtcggcttcgtcattcccgacgacaaacggctcaaa
gatatctttgtcgctccggacaatttcggggacgcctggcacggcgaccgggtcatggtc
gccaagacgcccggcaaacgggggcggaaccccgagggccgcatcgcccggctcctggaa
cgggggtgttcgaaactgccgatccgggtcacccggttgctgggcgacgaggccgtgctg
ggccggccgacctcgacccgccacaatttcagcctcatggtcgatatcaccggactcgag
gagcgccccaagacccgagacatcctcctggtcgccccgggcgaaaaaatcgaaccctac
ctttggggcggtgaagccctggaatatctgggcgccgaagaggaggcccatgtccaggag
gatctggtcaaagcgtcgcactctgtgcccaccgtctttcctgagcgggccttgcatgat
gcgcaacagctcccggacgaacccgaccccgaggaagtagctcgccgggccgatctgcgc
cacctcccctttgtgaccatcgacggggccaaagccaaggatttcgacgacgccatccat
gtcgcgcccacggacagcggctacaccctgcatgtggccatcgccgacgtcagccactac
gtccatcccggcagcgctctggacaaggaggcccagcaacggggcaattcctattacttc
ccccagtccgtggaacccatgctcccggaaaagctctccaacgggctctgcagtctgcga
cccaacgtcgaccgcttggtcatggtcgcggaaatggatttcacccggcagggcaagcgg
acaggatcgcggttttacccggccgtgctccaaagcgctttccgcttgacctacgcccag
gtcaagcaggccgtcctggaccgtgactccgccgcgcgcgacccgctgaccccggtcctg
cccatgcttgaaaacgccgaggccctggcccggagtcttttggccatgcgccagcgccgc
gggaccatgaatttcgatctcccggaaccggaaatccacttcaatctccaggacgaggcc
gtggacatccggccccgggtccgccatttcgggcaccagatcatcgaagaatgcatgatc
gcggccaacgaggccgtcgccgaattcctgcgcgaccgcgaggagccctgcatgtaccgg
gtccacccgccaccggacagcgacaagttggagaccctctttcgcctcctggcccagacc
gatctggcggaatccctgccccaggacaccagccccaaggacttgcaagaattgttgacc
cgggtggagggcaccaaactcgaattcctggtcaaccgtcttctgctccgaaccatgatg
caggcctattacagccccaaaaacgacggccactttggattggcttcagagtgctactgc
catttcacctcgcccatccgccgctacgccgacctggtcgtgcaccgctatctcaaacga
acgcttgccggcgaggatccgggcaagacgaatatcaaacgactgaccaaggttgccgac
cacatcagtcagcaggaacgtcgggccatggaagccgaacgggaaatcctgaagcggctg
accatcctcttcctgcgcgaccacgtcgggcgcacctttaccggggtcatcgcctccctg
gccgatttcgggttctgggtcgaactcgacgaggtcctggccgaaggcatggtccggctc
tcgaccctcaacgacgactactacgttttctggccggaaaaacagcagatcatcggcgaa
cgcaccgggcagaccttccgtttagggcaggaagtccgggtgaccttgaccgacgtcaac
ctggaccgtctggaggtcaacctggccttggaagaaaaatcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (27)   

Download RDF
DBGET integrated database retrieval system