KEGG   Dinoroseobacter shibae: Dshi_2908
Entry
Dshi_2908         CDS       T00612                                 
Symbol
rluE
Name
(GenBank) ribosomal large subunit pseudouridine synthase E
  KO
K06181  23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
Organism
dsh  Dinoroseobacter shibae
Brite
KEGG Orthology (KO) [BR:dsh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:dsh03009]
    Dshi_2908 (rluE)
Enzymes [BR:dsh01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.20  23S rRNA pseudouridine2457 synthase
     Dshi_2908 (rluE)
Ribosome biogenesis [BR:dsh03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    Dshi_2908 (rluE)
SSDB
Motif
Pfam: PseudoU_synth_2 DUF5818
Other DBs
NCBI-ProteinID: ABV94641
RoseoBase: Dshi_2908
UniProt: A8LJN8
Position
complement(3066582..3067118)
AA seq 178 aa
MLIAFNKPMNVLSQFTSEGKWRGLKDWIDVPGVYAAGRLDRDSEGLLLLTDDGRLQARIT
DPRAKMPKTYYALVEGRPSQDAINRLCEGVSLKDGPTRPAKVAAVPAPDWLWPRDPPVRL
RKTVPDAWLRLTITEGRNRQVRRMCAAVGLPCLRLIRTQIGDWTLDGLAPGQWRRIAP
NT seq 537 nt   +upstreamnt  +downstreamnt
atgctgatcgccttcaacaagcccatgaatgtgttgtcgcaattcacgtccgaggggaag
tggcgcgggttgaaggactggatcgatgtgccgggcgtctatgccgccgggcggctcgac
cgggatagcgagggcttgctgttgctgaccgatgacgggcgcctgcaggcgcggatcacc
gacccgcgggcgaagatgcccaagacctactatgcgctggtggaaggccgcccgagccaa
gacgcgatcaaccgtctgtgcgagggggtcagtctcaaggacgggccgacgcggcccgcc
aaggtcgccgccgtgcccgcgccggactggctctggccgcgcgacccgcccgtgcggctg
cgcaagaccgtgcccgatgcctggctgcgcctgaccatcaccgagggccgcaaccggcag
gtgcggcgcatgtgtgccgccgtgggcctgccctgcctgcgcctgatccgcacgcagatc
ggggattggaccctcgacgggctggccccggggcagtggcgccggatcgccccctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
   ROSEOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

Download RDF
DBGET integrated database retrieval system