KEGG   Sinorhizobium alkalisoli: EKH55_2164
Entry
EKH55_2164        CDS       T06241                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
eak  Sinorhizobium alkalisoli
Pathway
eak03030  DNA replication
eak03410  Base excision repair
eak03420  Nucleotide excision repair
eak03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:eak00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    EKH55_2164
   03410 Base excision repair
    EKH55_2164
   03420 Nucleotide excision repair
    EKH55_2164
   03430 Mismatch repair
    EKH55_2164
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:eak03032]
    EKH55_2164
   03400 DNA repair and recombination proteins [BR:eak03400]
    EKH55_2164
Enzymes [BR:eak01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     EKH55_2164
DNA replication proteins [BR:eak03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     EKH55_2164
DNA repair and recombination proteins [BR:eak03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     EKH55_2164
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     EKH55_2164
   MMR (mismatch excision repair)
    DNA ligase
     EKH55_2164
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      EKH55_2164
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT HHH HHH_3 RNA_ligase
Other DBs
NCBI-ProteinID: QFI67038
UniProt: A0A1E3V3Q4
Position
1:complement(2143836..2145989)
AA seq 717 aa
MLSNQKTVDELSEAEAAEELAFLAAELARHDALYHGQDAPEISDADYDALKRRNDLIEAR
FPALIREDSPSKKVGAAPSLTFQPVLHARPMLSLDNTFSDEDARDFVASVYRYLGLIPDH
SIAFTAEPKIDGLSMSLRYENRRLVTAATRGDGTTGENVTANIRTIGMIPQRLPADAPDV
VEVRGEVYMAKSDFAALNAEMAAQGKPLYVNPRNTASGSLRQLDAKVTASRKLRFFAYGW
GEVSDMPADTQFGMVEAFMAWGFPVNPLMRRFHSADELLEHYHHIERERPELDYDIDGVV
YKVDRLDLQTRLGYRSRSPRWATAHKFPAEQAFTRLKGIDIQVGRTGALTPVARLEPITV
GGVVVTNATLHNEDYIRGVGNNGEPIRDGRDIRIGDMVIVQRAGDVIPQIVDVVLDERPE
GTAPYSFPMACPVCGSHAVRDINEKTGKVDAVRRCTGGFVCRAQAVEHLKHFVSRNALDI
EGLGSKQIEFFFESDDDNLKIRTAPDIFTLERRQETSLTKLENIEGFGKVSVRKLYDAIN
ARRSIALHRFIYALGIRHVGETTAKLLARSYGSYETFGAAMKEAGSYSGDAWNELNSIDG
IGEVVARAIVEFYKEPRNVKVISDLLEEVTPESAEMPVTTGSPVAGKTVVFTGSLEKMTR
DEAKAKAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGIQTMDEDEWLALIGA
NT seq 2154 nt   +upstreamnt  +downstreamnt
atgttgagcaatcagaaaaccgtcgatgaattgagcgaagcggaagcggccgaggagctt
gcctttctcgccgctgaactcgcacgccatgatgcgctttatcacgggcaggatgcgccg
gaaatctcggatgctgactacgacgctctaaagcggcgcaatgatctgatcgaggcgcga
tttccggcgctgatccgcgaggatagcccgtcgaagaaggtcggtgcggcaccgtcgctc
acattccagcccgtcctccatgcgcggccgatgctctcgctcgacaacaccttctccgac
gaggatgcgcgcgacttcgtggcgagcgtctatcgctatctgggtctcatcccggaccat
tccatcgcctttaccgccgagccgaagatcgacgggctttccatgtcgctccgctacgag
aaccgccgcctggtgacggcggcgacgcgtggcgacggcacgacgggggagaacgtcacc
gccaacatccgcacgatcggcatgatcccgcagaggcttccggccgatgcgccggatgtc
gtcgaggtgcgcggcgaggtctatatggcgaaatcggatttcgccgcgctcaatgccgag
atggccgcgcagggcaagccgctctacgtcaacccgcgcaacacggcatccggctcgctc
cggcaactcgatgccaaggtgacggcgagccgcaagctccggttcttcgcctatggctgg
ggcgaagtctcggacatgccggcggatacgcagttcggaatggtggaggcattcatggcc
tggggcttcccggtcaatccgctgatgcgccgcttccattccgccgacgaactgctggaa
cactatcaccatatcgagcgcgagcgcccggaactcgactatgatatcgacggcgtcgtc
tacaaggtcgaccggctcgacctgcagacacggctcggctaccgctcgcgtagcccacgc
tgggcaaccgcccacaagttcccggccgagcaggccttcacgcgattgaagggcatcgac
atccaggtcggccgtaccggtgcgcttacgccggtcgcgcggctggagccaatcaccgtc
ggcggcgtcgtcgtcaccaatgcgaccctgcacaatgaggactatattcgcggcgtcggc
aacaatggcgagccgatccgcgatggccgggacatccgcatcggcgacatggtgatcgtg
cagcgggcaggggacgtgatcccgcagatcgtcgacgtggtgctggatgaacggccggag
ggcacggcgccctacagcttcccgatggcgtgcccggtctgcggcagccatgcggtgcgc
gacatcaacgagaagaccggcaaggtcgacgcggtgcgccgctgcacgggcggcttcgtt
tgccgggcgcaggcggtcgaacacctgaaacatttcgtctcgcgcaatgccctggacata
gaggggctcggctccaagcagatcgagttcttcttcgagagcgacgacgacaacctgaag
atccgcacggcccccgatatcttcacgctggagcgccggcaggagacctcgctgacgaag
ctcgagaatatcgagggcttcggcaaggtcagcgtgcgcaagctctatgatgcgatcaat
gcccgccgctcgatcgcgctccaccgcttcatctacgccctcggcattcgccatgtcggt
gagacgacggcgaagctcctggcgcgatcctatggtagctacgaaacattcggcgcggcg
atgaaagaggcgggcagctattcgggtgacgcctggaacgaactcaacagcatcgacggc
atcggcgaggtcgtcgcccgcgccatcgtcgagttctacaaggagccgcgtaacgtcaag
gtcatctcggacctgctcgaagaggtgacgccggagagcgccgaaatgccggtcaccacc
ggcagcccggttgccggcaagacggtcgtcttcaccggctctctcgaaaagatgacgcgc
gacgaggcaaaggcaaaggccgagagcctcggtgccaaggtcgcgggttcggtgtcgaag
aagaccgacatcgtcgtcgccggccctggcgccggctccaagctcgacaaggcgcgcgag
ctcggcatccagaccatggacgaggacgagtggctggcgctgatcggcgcttga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (29)   

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