KEGG   Eucalyptus grandis (rose gum): 104444206
Entry
104444206         CDS       T03547                                 
Name
(RefSeq) LOW QUALITY PROTEIN: eukaryotic initiation factor 4A-III homolog B
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
egr  Eucalyptus grandis (rose gum)
Pathway
egr03013  Nucleocytoplasmic transport
egr03015  mRNA surveillance pathway
egr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:egr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104444206
  09122 Translation
   03013 Nucleocytoplasmic transport
    104444206
   03015 mRNA surveillance pathway
    104444206
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:egr03019]
    104444206
   03041 Spliceosome [BR:egr03041]
    104444206
   03009 Ribosome biogenesis [BR:egr03009]
    104444206
   03012 Translation factors [BR:egr03012]
    104444206
Enzymes [BR:egr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     104444206
Messenger RNA biogenesis [BR:egr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     104444206
   mRNA cycle factors
    Stress granule specific factors
     104444206
Spliceosome [BR:egr03041]
 Complex C
  Other components
   EJC/TREX
    104444206
Ribosome biogenesis [BR:egr03009]
 Eukaryotic type
  90S particles
   Helicases
    104444206
Translation factors [BR:egr03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    104444206
SSDB
Motif
Pfam: DEAD Helicase_C ResIII
Other DBs
NCBI-GeneID: 104444206
NCBI-ProteinID: XP_039168119
Position
5:12090746..12099955
AA seq 362 aa
MATSLMARPVPATRSRPPAAFETALGVEAMSSFDRMGLSDDVLRGIYSHRFDNPSAIQQR
AMVPIVRGQDVIAQVQSGMGKISTFALASCQIVDTSRKDVQVLILSPTRDLASQTERVVL
AIGSYRNVLAHACVGGKSMGEDIRKLEHGVNVVSGTPGRVLDMIKRRTLCTRAIKLLVLD
EADEMLSRGFKDQIYDVYRFLPPELQVVLVSATFPTEILEMTGRFMTDPIRIVVKRDELM
LEVXVMFVEQVEWLAEKMRDSNFTVSVMHGDMPQKERDAVMAGFQSGATRLMITTDVWAR
GIDVEQVCLVVNYDLPNSRELYVHRAGRVGRFGRKGVVVNFVKDNEIRIRRDIEQYYGTN
IR
NT seq 1089 nt   +upstreamnt  +downstreamnt
atggcgacgtccttgatggcaaggccagttccggcgacccgatcgcgcccgccggctgca
ttcgagacggcgctaggcgtggaggccatgtcaagcttcgaccgcatgggcctgagtgac
gatgtcctccgtgggatctacagccacaggttcgacaacccctcggcgattcagcagcga
gccatggtgccgattgtccggggccaagacgtgatcgctcaggtgcaatccggcatgggc
aagatctccacctttgccctcgcgtcttgccaaatcgtggacacctccagaaaagacgtg
caagtgctgattttgtcacctacgagggatttggcgagtcagacggagagagttgtgctg
gctatcggttcttacaggaacgtgctagcccatgcatgtgttggaggcaagagcatgggt
gaagatatccggaaattggagcatggagttaatgttgtgtccggaactccaggcagggtg
ctcgacatgataaagaggagaactctttgcaccagagccatcaaactcctagtccttgac
gaagctgatgagatgctgagcagaggatttaaggatcaaatctatgatgtttacagattc
cttcctccagagcttcaggttgtcttagtttcagcaaccttccccactgagatattagag
atgacaggaagattcatgaccgatcccataaggattgttgtgaagcgtgatgagttgatg
ctggaggtgnnagttatgtttgtcgagcaggtggagtggcttgctgaaaagatgcgtgat
tctaacttcactgtgtctgtcatgcacggggacatgcctcaaaaggagagagatgcagta
atggctggattccaatctggggcgactcggttgatgatcaccactgatgtgtgggctcga
gggattgatgttgagcaggtttgtctcgttgtcaactatgatcttcccaacagcagagag
ctgtatgtccatcgggccggtcgagtaggccgttttgggcggaagggtgttgtggtaaat
tttgtcaaagacaacgagatccggattcgtagagacatagaacagtattatggcaccaac
atacgctaa

  All links  
Ontology (6)   
   KEGG BRITE (6)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (23)   

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