KEGG   Elaeis guineensis (African oil palm): 105039099
Entry
105039099         CDS       T03921                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
egu  Elaeis guineensis (African oil palm)
Pathway
egu04120  Ubiquitin mediated proteolysis
egu04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:egu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    105039099
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    105039099
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:egu04121]
    105039099
Enzymes [BR:egu01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     105039099
Ubiquitin system [BR:egu04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    105039099
  Multi subunit Ring-finger type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     105039099
SSDB
Motif
Pfam: WD40 zf-C3HC4_2 zf-C3HC4 zf-C3HC4_3 WD40_like zf-RING_2 zf-C3HC4_4 zf-RING_UBOX zf-RING_5 YbfN U-box DUF1664 zf-RING_10 Prok-RING_4 Baculo_p24 zf-Nse zf-rbx1
Other DBs
NCBI-GeneID: 105039099
NCBI-ProteinID: XP_010913400
UniProt: A0A6I9QQF0
Position
2:42984734..43003805
AA seq 686 aa
MGESSVGALVPSVVKPESRASPAAAPAVSCSGTTDAAAAEVATARGAAAEEAELDKDLLC
PICMGVIKDAFLTACGHSFCYMCIVTHLNNKSDCPCCGNYLTKSQLFPNFLLNKLLKKTS
ARQIAKTASPVEHLRLALQQGCEMSIKEVDGLLSLLSEKKRKMEQQEAETNMQILLDFLH
CLRKQKMDELNEVQTDLQYIKEDINAVERHRIELYRARERYSVKLRMLSDDPVATKLWPS
TVDKRNSILVSSARSSVIGMCTGNFQGKKVDMKAQISHQVNQRKEAFNGPDPQHSLTQSG
LAIARKKRVHTQFNELQECYLQKRRLGPNQLHRQEDKDINVISREGYHPGLEDFQSVLTT
FTRYSRLRVIAELRHGDLFHSANIVSSIEFDRDDELFATAGVSKRIKVFEFSTVVNEPSD
VHCPVVEMSTRSKLSCLSWNKYSKNIIASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSV
DFSQTEPSMLVSGSDDCKVKVWCMKQEASVINIDMKANICCVKYNPGSSIYVAVGSADHH
IHYFDLRNTSTPLHVCRGHRKAVSYVKFLSVNELASASTDSTLRLWDVKENCPVRTFKGH
TNEKNFVGLTVNNEYIACGSETNDVFVYHKAISKPAACHRFGSSDLDDTDDDSGSYFISA
VCWKSDSPTMLTANSQGTIKVLVLAA
NT seq 2061 nt   +upstreamnt  +downstreamnt
atgggggagtcgtcggttggggcgctggtgccctcggtggtgaagccggagtcgagggcg
tcgcctgcggcagcgccggccgtctcgtgctctgggacgacggacgcggcggcagcggag
gtggcgacggcgaggggggcagcggcggaggaggcggaactggacaaggacctactgtgc
ccgatatgcatgggggtgataaaggacgcgttcttgacggcgtgtggacacagcttctgc
tacatgtgcatcgttacccacctcaataacaagagtgactgcccctgctgcggcaactac
ctcaccaagagccaactcttccccaatttcctcctcaacaagcttctgaagaagacatcg
gctcgtcaaattgcaaaaactgcatcacctgttgagcatcttcgcctggcactacaacag
ggttgtgaaatgtcgatcaaagaggtagatggtctattatctctcctttctgagaaaaag
cggaaaatggagcaacaagaggctgagacaaatatgcagatcttactagactttttacat
tgccttaggaagcaaaagatggacgagctgaatgaggttcaaactgatctgcagtatatc
aaagaagatataaatgctgtagagagacacagaatagaattataccgggcaagagagaga
tactctgtgaaattgcgcatgctttcggatgatcctgtagcaacaaagctatggccttct
acagttgacaagcgtaacagtatccttgtctccagtgcccgtagctctgttattgggatg
tgcactggaaattttcagggtaagaaggttgacatgaaggctcaaataagtcatcaagta
aaccaaagaaaagaagcctttaatggtccagacccacaacattctcttactcaatcaggg
ctggctatagctagaaagaagcgagtccatacacagtttaatgagctccaagaatgttat
ttgcaaaagaggcgtcttggacctaatcaactgcataggcaagaagacaaagatataaat
gtcataagcagagaaggctatcacccaggtcttgaggattttcagtctgtgctgactacc
ttcacccgatacagtcgcttgcgtgtcattgctgaactcagacatggggatctctttcac
tctgcaaacattgtatccagcatagagtttgaccgtgatgatgagttgtttgccaccgct
ggagtgtcaaaacgaataaaagtttttgagttttccacagttgtaaatgaaccatctgat
gtacactgcccggttgtggaaatgtctactaggtccaagcttagttgcttaagttggaac
aaatactcaaaaaacattattgctagtagtgactatgaagggatagtaactgtttgggat
gtgactactcgacagagtgtgatggaatacgaagagcatgaaaaaagagcatggagtgtt
gatttttcacagacagagccatcaatgctagtatctggcagtgatgattgcaaggtcaaa
gtatggtgcatgaaacaagaggcgagtgtaatcaatatcgacatgaaagcgaatatttgc
tgtgtcaaatataatcctggatccagcatttatgtggcggttggttctgccgatcatcac
atccactattttgacttgaggaacaccagcacaccactccatgtttgtcgagggcacaga
aaagcagtttcatatgtcaaattcttgtctgtcaatgagcttgcatctgcatcaactgac
agtacattgcgcttgtgggatgtaaaagagaactgccctgtgcggacattcaaaggccac
acaaatgagaagaactttgtgggtctgacggtaaacaatgagtacattgcttgtggcagc
gaaacaaatgacgtttttgtgtaccataaggctatctccaaacctgcagcatgtcatagg
tttggctcctctgatttggatgacacagatgatgattctggatcgtatttcattagtgct
gtttgctggaagagtgacagccctacaatgttaaccgccaacagtcaggggacgataaag
gtcctcgtacttgcagcttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (17)   
   Pfam (17)   
All databases (33)   

Download RDF
DBGET integrated database retrieval system