KEGG   Elaeis guineensis (African oil palm): 105052610
Entry
105052610         CDS       T03921                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
  KO
K12820  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
Organism
egu  Elaeis guineensis (African oil palm)
Pathway
egu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:egu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105052610
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:egu03041]
    105052610
   03009 Ribosome biogenesis [BR:egu03009]
    105052610
Enzymes [BR:egu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     105052610
Spliceosome [BR:egu03041]
 Complex A
  U2 snRNP components
   U2 related factors
    105052610
 Complex B
    105052610
 Complex C
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-SnRNP related factors
    105052610
Ribosome biogenesis [BR:egu03009]
 Eukaryotic type
  90S particles
   Helicases
    105052610
SSDB
Motif
Pfam: OB_NTP_bind HA2_C HA2_N Helicase_C AAA_19 AAA_22 DEAD AAA_30 Flavi_DEAD nSTAND3 AAA_11 SLFN-g3_helicase
Other DBs
NCBI-GeneID: 105052610
NCBI-ProteinID: XP_010931770
UniProt: A0A6I9RSJ3
Position
10:complement(16031499..16036048)
AA seq 659 aa
METPAEVNGSPLSRRCQKILERRRKLPVWTYREKFLDTLAKHQIVVVAAPPGSGKSTQIP
QFVVEAGYASNGKQIACTQPRRLVAMALSRRVAQEMNVTLGEKVGCSVQFEDFCSPKTVL
RYLTDGVLLRQALSDRLLEMYGVIILDEAHLRTLATDVLLAYFKKLLATNARPDLKLIIM
STQFEAKKFRDYFKGARIVQPCPSLNPVEINYTKDIVKDYVEAAIERVVEILVSESVGDV
IVFLTGVEEIETFCWRLGKAITDLGDKIGPVRVLPLHSTVSVDMQKKIFKAAPPPTRKGG
PVGRKVVVSTDIAESSLAIDGIVYVVDCGYAKQKVYNAQLRVESLLILPISRASAQQRAG
CARRSVSGKCFRLYSQKYFEAAQLKAFPEILRANLASTILQLKKLGIDDLLHLELMDPPP
AETITRAVETLKCFGALDEEGSLTELGKLMNEFPLDPQMSRMIVGSPQFQCSNEILSIAS
MLSVPNCFLRPVENQQVADKARANFSHINGDHLTLLNVYHAYKLHDGDSTWCENNFINQA
VLRSADRVRNQLATLMLKLNLKLCSPDFNSSDYYDNIRKGLLAGYFMQVAQLEHSGCYAI
VKDHHVVDLHPSSCLASRPAWVIYNDFVLGSRNFIRIITDVRREWLVDVAPHYYRIATI
NT seq 1980 nt   +upstreamnt  +downstreamnt
atggagacgccagcggaggtcaatgggtcgccgctgtcgcggcggtgccagaagatactg
gagaggaggcggaagctccccgtttggacctatcgagagaagttcctcgacaccctcgcc
aagcaccagatcgtcgtcgtcgccgcgccgccgggctccggcaagtccacgcagatccct
caatttgttgtcgaggcaggttatgcaagtaatgggaagcagattgcttgcacccaacct
cgtaggctagttgcaatggccctgtctcgtcgagtagctcaagagatgaatgtgactttg
ggagagaaagtcggttgttctgtgcagtttgaagacttctgcagtcccaaaactgttcta
aggtacctgacagatggtgtgcttctaagacaagcactgtctgatcggcttttagaaatg
tatggggtgataattcttgatgaggcacaccttaggaccttggctacagatgttcttctc
gcttattttaagaaactgctggcaacaaatgctcgacctgaccttaaacttattattatg
agtacacagtttgaggctaagaagttccgggattattttaagggtgcacggatcgtgcaa
ccatgtccgtcacttaatcctgtagagatcaattatacaaaggatatagtgaaggattat
gtagaggcagcaattgagagagttgtggagatacttgtgtctgaatcagttggtgacgta
attgtttttcttactggagtggaagagatagaaactttctgctggaggctaggaaaagca
attacagacttaggagataaaattgggcctgttagagtccttcctctccattccacagtg
tcagttgatatgcagaagaagattttcaaggctgctcctcctccgacaagaaagggtggt
cctgttggacggaaggttgtggtttcaacggacattgcagaatcatcattagcaattgat
ggcattgtttatgttgttgattgtgggtatgctaaacagaaagtttataatgcacaattg
cgtgttgagtccttactgattttgccaatatcaagggcaagtgcacaacagagagcagga
tgtgcaagaaggtcagtctctgggaaatgctttagactgtattcacagaagtattttgaa
gctgctcagttgaaagccttcccagagattctccgagcaaatcttgcaagcaccatcctt
cagttaaagaaactaggaattgatgatttgcttcatcttgagcttatggatcctcctcct
gcggaaacaatcacacgagctgttgaaactttgaaatgttttggtgctttggatgaggag
gggagcctgactgaactggggaagcttatgaatgagtttcctttggatcctcagatgtca
aggatgattgttggtagcccacaattccagtgctccaatgagattctctccattgcttcc
atgctatcagtaccaaattgcttcttacggcctgtggaaaaccagcaagttgctgataaa
gcgagagctaattttagccacatcaatggggatcacctcactcttttgaatgtctaccat
gcatataagctacatgatggagattctacctggtgtgaaaacaattttatcaatcaggca
gtgttgagatctgccgaccgtgtgaggaatcagcttgcaactctcatgctgaagctgaac
cttaagctttgctccccagactttaacagcagcgattattatgacaacataagaaagggc
cttctggcaggttattttatgcaggttgctcagctcgagcattcaggttgctatgcaatt
gttaaagatcatcatgttgtcgaccttcatccatcaagctgtcttgcttcaaggccagca
tgggtcatatacaatgattttgtcttaggcagtaggaatttcattcgtatcatcacagat
gttcgcagggagtggttggtggatgttgcaccgcattattaccgaatagcaaccatctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (12)   
   Pfam (12)   
All databases (28)   

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