KEGG   Egretta garzetta (little egret): 104122533
Entry
104122533         CDS       T05152                                 
Symbol
COL6A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(VI) chain
  KO
K06238  collagen type VI alpha
Organism
egz  Egretta garzetta (little egret)
Pathway
egz04510  Focal adhesion
egz04512  ECM-receptor interaction
egz04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:egz00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    104122533 (COL6A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    104122533 (COL6A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    104122533 (COL6A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:egz04147]
    104122533 (COL6A1)
   00536 Glycosaminoglycan binding proteins [BR:egz00536]
    104122533 (COL6A1)
Exosome [BR:egz04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   104122533 (COL6A1)
Glycosaminoglycan binding proteins [BR:egz00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   104122533 (COL6A1)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   104122533 (COL6A1)
SSDB
Motif
Pfam: VWA Collagen VWA_2 VWA_3 DUF1194 vWA-TerF-like
Other DBs
NCBI-GeneID: 104122533
NCBI-ProteinID: XP_009632971
Position
Unknown
AA seq 1017 aa
MRLRDFLFTLLLPAGFLGRGSWAQGPEITTRVANAEDCPVDLFFVLDTSESVALRVKPFG
DLVTQVKDFTNQFIDKLTNRYYRCDRNLVWNAGALHYSDEVVLIKSLTSMPSGRNELKNR
VSAVNYIGKGTYTDCAIKRGIEELLISGSHHKENKYLIVVTDGHPLEGYKEPCGGLDDAA
NEAKHLGIKVFSVAISPNHLDQRLNIIATDQAYRRNFTATSLKPTKGVDVEETINTIIDM
IKVNTEQSCCSFECQPPRGPPGPPGDPGNEGERGKPGLPGQKGEAGDPGRPGDMGPVGYQ
GMKGDKGSRGEKGSRGAKGAKGEKGRRGIDGIDGMKGEAGYPGLPGCKGSPGFDGAQGPP
GPKGDPGAYGPKGGKGEPGNDGKPGRQGIPGSPGEKGTPGNQGEPGPAGEMGDEGAPGMD
GPPGERGSNGERGPPGSPGDRGPRGEPGEPGPPGDQGREGPLGPPGDQGEAGPPGPKGYR
GDDGPRGNEGPKGLPGAPGLPGDPGLMGERGEDGPPGNGTIGFIGAPGQPGDRGDPGING
TKGYVGPKGDEGEAGDPGNDNPTPGPRGIKGAKGHRGPEGRPGPPGPVGPPGPDECEILD
IIMKMCSCCECTCGPVDLLFVLDSSESIGLQNFQIAKDFIIKVIDRLSKDERVKFEPGES
RVGVVQYSHDNTQELVAMGDANIDNIGALKQAVKNLKWIAGGTYTGEALQFTKDNLLRRF
TSDKRVAIVITDGRSDTLRDPTPLNSLCDVTPVVSLGIGDIFRNPPNPDHLNDIACLSRP
TRPGLSIQRDNYAELLDDTFLQNITSYVCQEKKCPDYTCPITFTGLADITLLVDSSTSVG
SKNFETTKKFVKRLCERXSDDSVRVSVVQYSGRNQQKVEAQFQYNYTVIAKAIDNMEFIN
DATDVNAALQYVTGLYQQSSRRGAKKRVLVFSDGNSQGITARAIERAVQEAQQAGIEIYV
LAVGNQANEPNIRVLVTGKSADYDVVYGERHLFRVPDYTSLLRGVFYQTVSRKIAVD
NT seq 3054 nt   +upstreamnt  +downstreamnt
atgaggctgcgagactttctattcactttgctgctcccggctggcttcctggggaggggc
tcgtgggctcagggcccagaaatcaccactcgggtcgcaaatgcagaagactgccccgtg
gatctgttcttcgtcctggacacctcagagagcgttgcccttagggtgaagccctttggg
gacctggttacccaagtgaaagatttcaccaatcagttcattgataagctgacaaacagg
tactaccgctgcgaccgcaacctagtgtggaatgctggggcactgcactacagcgacgag
gtcgtgctcatcaagagcctcacctcgatgcccagtggccggaacgagctgaagaaccgt
gtctcggctgtgaactacatcgggaagggtacctacacagactgtgccataaagcggggc
attgaggagttgctcatcagtggctcccatcacaaggaaaataaatatctgatcgtggtg
actgatggacaccccttggaaggatacaaggagccctgtggaggcctggatgatgctgca
aatgaagccaagcatttggggatcaaagtgttctctgttgccatctcccccaaccacctg
gaccagcggctcaacatcattgccacagaccaggcctaccgccgcaacttcactgccacc
agcctgaagccaaccaagggtgtcgatgtggaggaaaccatcaacaccatcatcgacatg
attaaagttaacacggagcaatcgtgctgctcgtttgagtgccagcctccccgagggccc
cctggacctcccggtgacccaggcaatgagggagaaagaggcaagccaggtcttcccggc
cagaaaggagaggctggagacccaggcaggccaggggacatgggacctgttggctaccaa
ggaatgaagggtgacaaaggaagtcgaggagaaaagggctcgagaggagccaaaggagcc
aagggtgagaagggcaggcgtggaattgatggcattgatggcatgaagggtgaagccgga
taccctgggttacctggctgcaaaggctcacctggatttgatggagctcaaggcccaccg
ggaccaaagggagatcctggtgcttacggacccaagggaggaaagggggagcctgggaac
gatggaaaacctggccgacaggggattcctggcagccctggagagaagggcacacctgga
aaccagggtgagcctggaccggcaggagaaatgggtgatgagggtgctcctggcatggat
ggtcctcctggagaacggggcagcaatggagaaagaggccctccaggatcaccgggtgac
cgtggaccgagaggagagccgggagagcctggaccacctggtgaccaagggcgggaagga
cctcttggaccacctggtgaccagggcgaggctggacccccaggacccaagggctacagg
ggagacgacggcccccgcggcaatgagggcccaaagggattgcctggagcacctggactg
cctggagaccctggcctgatgggagaaagaggggaggatggccctcctgggaatggcacg
attggattcataggtgctccagggcagccaggagacagaggtgaccctggcattaacgga
acgaaaggctatgtcggtcctaaaggtgatgaaggagaagctggagaccctggcaatgat
aacccaacccctggccccaggggcatcaaaggagcgaagggccacaggggacctgaaggc
cgcccgggaccaccaggacctgtggggcctccaggaccggatgaatgtgaaatcttggac
atcatcatgaagatgtgctcttgctgcgagtgcacctgtggtcctgtcgacctcctcttc
gtgttggacagctctgagagcatcggcctgcagaactttcagattgccaaagacttcatc
atcaaagtcatcgaccgcttgagcaaggatgagcgtgtgaagtttgaacccggggagtcc
cgtgtgggtgttgtgcagtacagccacgacaacacgcaggagctggtggccatgggggat
gccaacatagacaacattggggcgctcaaacaggcagtcaagaacctgaaatggatagct
gggggcacctacactggagaagccctgcagttcaccaaggacaacctgctgcggagattc
acctctgacaagcgtgttgccattgtcatcacagatggacgctccgacacgctgcgggac
cctaccccgctcaactctctgtgcgacgtcaccccggtggtttcccttgggataggtgac
attttccggaaccctccaaatccagatcacctgaatgacattgcttgtttaagcagacca
accaggccaggactgtccattcaaagggacaactatgctgagctcctggatgataccttc
ttgcagaacatcacctcgtatgtctgccaagagaagaaatgtcctgactatacctgccca
atcaccttcaccgggctggcagacatcacgctgctggtggacagctccaccagcgtgggg
agcaagaacttcgagaccaccaagaagttcgtgaagcggctttgcgagaggngttcggat
gactcagtgcgtgtctcagtggtccagtatagtggcaggaaccagcagaaagtggaagct
cagttccagtacaactacacggtcattgccaaagccattgacaacatggagttcattaac
gatgccacagatgtcaatgccgctctgcagtacgtcacagggctgtaccagcagtcttcc
cgtcgtggggcaaagaagagggtgctggtgttttctgatggcaactctcaagggatcacc
gcgagggccattgagagggctgtgcaggaagctcagcaggctggtatagagatctatgtg
ctggcagtgggcaaccaagccaacgagcccaacatccgcgtcctggtcacggggaagagc
gcagattacgatgtggtctatggggagcgccacctcttccgtgtgccggactatacctct
ctgctgcgtggcgtgttctaccaaactgtctccaggaagatagctgttgactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (34)   

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