KEGG T01718: EKO11

Escherichia coli KO11FL: EKO11_0552

Entry

EKO11_0552        CDS       T01718

Name

(GenBank) polyribonucleotide nucleotidyltransferase

K00962

polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]

Organism

eko Escherichia coli KO11FL

Pathway

eko03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:eko00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EKO11_0552
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:eko03019]
    EKO11_0552
   03016 Transfer RNA biogenesis [BR:eko03016]
    EKO11_0552
Enzymes [BR:eko01000]
2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     EKO11_0552
Messenger RNA biogenesis [BR:eko03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     EKO11_0552
Transfer RNA biogenesis [BR:eko03016]
Prokaryotic type
  tRNA degradation factors
   EKO11_0552

SSDB

Motif

Pfam:

RNase_PH PNPase S1 RNase_PH_C KH_1 S1_2 KH_2 DUF2110 aRib SLS1_KH2 DUF5813

Other DBs

NCBI-ProteinID:

ADX49208

Position

574773..576908

AA seq 711 aa
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT
VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA
GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE
ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI
EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR
DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD
ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA
INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
DGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQGE

NT seq 2136 nt +upstreamnt +downstreamnt
ttgcttaatccgatcgttcgtaaattccagtacggccaacacaccgtgactctggaaacc
ggcatgatggctcgtcaggctactgccgctgttatggttagcatggatgacaccgcggta
tttgttaccgttgttggccagaaaaaagccaaaccaggtcaggacttcttcccactgacc
gttaactatcaggagcgtacctacgctgctggtcgtatcccgggtagcttcttccgtcgt
gaaggccgcccaagcgaaggcgaaaccctgatcgcgcgtctgattgaccgcccgattcgc
ccgctgttcccggaaggcttcgtcaacgaagttcaggttatcgccaccgtggtttctgtt
aacccgcaagttaacccggatatcgtcgcgatgattggtgcttccgcagcactgtctctg
tctggtattccgttcaatggtccgattggtgctgctcgcgtaggttacatcaatgaccag
tacgtactgaacccgactcaggacgagctgaaagagagcaaactggatctggttgttgcc
ggtactgaagccgctgttctgatggttgaatctgaagctgaactgctgagcgaagaccag
atgctgggcgcagtagtgttcggtcatgaacaacagcaggttgttattcagaacatcaat
gaactggtgaaagaagccggtaaaccacgttgggactggcagccggagccggtaaacgaa
gcgctgaacgcgcgcgttgctgcactggctgaagctcgcctgagcgatgcttaccgcatc
accgacaaacaagagcgttatgcgcaggttgatgtcatcaaatctgaaaccatcgcgacg
ctgcttgctgaagacgaaaccctggacgaaaacgaactgggtgaaattctgcacgctatc
gagaaaaacgttgttcgtagccgcgtactggcaggcgaaccgcgtatcgacggtcgtgaa
aaagatatgatccgtggtctggatgtgcgtactggcgtgctgccgcgtactcacggttct
gcgctgttcacccgcggtgaaacgcaggcactggtcactgcaacgctgggtaccgctcgt
gacgcgcaggttcttgatgaactgatgggcgaacgtaccgataccttcctgttccactac
aacttccctccgtactccgtaggcgaaaccggcatggtcggttctccgaagcgtcgtgaa
attggtcacggtcgtctggcgaagcgcggcgtgctggcagtcatgccggatatggacaaa
ttcccgtacaccgtacgtgtagtgtctgaaatcaccgaatccaacggttcttcttctatg
gcttccgtgtgcggcgcgtctctggcgctgatggacgcaggtgtgccaatcaaagctgcc
gttgcgggtatcgcaatgggtctggtgaaagaaggcgacaactacgttgtactgtctgac
attttgggcgacgaagatcacctgggcgatatggacttcaaagttgcaggttcccgcgac
ggtatctctgcactgcagatggatatcaaaattgaaggtatcaccaaagagatcatgcag
gttgcgctgaaccaggctaaaggtgcgcgtctgcatatcctgggcgtaatggaacaggcg
atcaacgcgccgcgtggcgatatctctgagttcgcaccgcgtatccataccatcaagatc
aacccggataagatcaaagacgttatcggtaaaggcggctctgttatccgtgccctgacc
gaagaaactggcactaccatcgaaatcgaagatgacggtactgtgaagatcgcagcgacc
gacggcgagaaagcgaaacatgctattcgtcgtatcgaagagatcactgcagaaatcgaa
gtgggccgcgtctacactggtaaagtgacccgtatcgttgactttggcgcatttgttgcc
atcggcggcggtaaagaaggtctggtccacatctctcaaatcgctgacaaacgcgttgag
aaagtgaccgattacctgcagatgggtcaggaagtaccggtgaaagttctggaagttgat
cgccagggccgtatccgtctgagcattaaagaagcgactgagcagtctcaacctgctgca
gcaccggaagctccggctgctgaacagggcgagtaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (21)   

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