KEGG   Exaiptasia diaphana (Aiptasia): 110248152
Entry
110248152         CDS       T05080                                 
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 34
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
epa  Exaiptasia diaphana (Aiptasia)
Pathway
epa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:epa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110248152
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:epa03019]
    110248152
   03400 DNA repair and recombination proteins [BR:epa03400]
    110248152
Enzymes [BR:epa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     110248152
Messenger RNA biogenesis [BR:epa03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     110248152
DNA repair and recombination proteins [BR:epa03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      110248152
SSDB
Motif
Pfam: Helicase_C DEAD ResIII RecQ_Zn_bind AAA-ATPase_like
Other DBs
NCBI-GeneID: 110248152
NCBI-ProteinID: XP_020910309
Position
Unknown
AA seq 622 aa
MASLEHAFDVVSTKFGIQSLNHHQKSAITTIVEEGRDIFINVPTGFGKSLIYQSLPLVFD
VTKEDHGHIAVVVSPLTSLMNDQVAYLKKIGINSVSISSIEEEVRRSVESGGYSIVFGSP
ESXLKNERWRSMLSNEVYSKKLCAIAIXEAHVXRQWGVSNDKKMAAFXESYSKLYXLRSL
APQVPFLALTATATQLTKSTIITLLHMDNVHEIKEXTNKLNIAYSVQRIDKDMELQCYFD
WLXDELKQNKEKTERTIIYCQTIRQCGIIYGNIKSLMADKMYVGXTARSTLVELLHSCTP
AANKEHVLQSFQSETGTVRLLIATIAFGMGIDCKGVQRVIHFGPSKTIESYVQETGRAGR
NGKQSMAYILFNGVMMTHVDAEMKQFISTKECRRKTLLKHFEDTITAPVQRHLCCDNCAA
KCGVCIPHITKYPACLVDDNFVSSNACLERQVSKQQMDIVKDELTKYHKSIMMQLVGSTA
NGDVKTLTNPQFMLGFSXVQILQVLNNVQRIFSMKDVYNFVEIWDRQHACAIYSIIGLVF
GDJDGNSAVHVLEDCEDIEFTEDLLDEWHNILQDXELYEMIIDNISLSQLENSSFEDAGE
ISFDVLXSAVLSTVGNMTLDSL
NT seq 1869 nt   +upstreamnt  +downstreamnt
atggcgtctctcgaacatgcattcgatgttgtgagcacaaaatttggtattcagagtcta
aatcatcatcaaaaatctgcgataacgaccattgtcgaagaaggaagggatattttcatc
aatgtaccaacgggctttggaaagtcactaatttatcaatccctaccgttagttttcgat
gtgacaaaggaagatcatggtcacattgccgtcgttgtatcacctttgacgagtcttatg
aatgaccaggtagcttatttgaagaaaattggaatcaactcggtcagtataagctcaata
gaagaagaagtgcgaagatccgttgaaagtggcggatattcaattgtttttggttcgccc
gagtcatgrttgaagaatgagcgctggaggtcaatgctttcaaatgaagtctattctaaa
aagttgtgtgctatagcaattkatgaagcycacgttrtgcgacagtggggtgtatcaaac
gacaagaaaatggccgccttcaragaatcctactcaaagttgtatragctacgttcactt
gctcctcaagttccattcttggcattgacagcaacagcaacgcagcttacsaagagtaca
ataataacacttctacacatggacaatgttcatgaaatcaaagaaakyactaacaaactg
aacattgcttacagtgtgcaaaggattgataaagatatggaattacaatgttattttgat
tggttaamagatgaattgaagcagaataaagaaaaaacagagagaacaattatatattgt
caaactataaggcagtgtggaattatatatggcaatatcaaatcccttatggcagataaa
atgtatgttggagasactgcaagaagcactcttgtagaattgctgcactcatgcactcca
gctgcaaataaagaacatgtactgcaatctttccaatcagaaactggaacagtacggtta
ctgatagcaacgatcgcctttggaatgggtatagactgtaaaggtgtccaaagggtcatt
cattttgggccctcaaaaactattgaatcgtatgttcaggaaactggtcgagcaggaaga
aatggcaaacaaagcatggcatacatactatttaatggtgtaatgatgactcatgttgac
gcagaaatgaagcagttcatcagtacaaaagaatgtagaaggaaaactcttttaaaacat
tttgaagatactattactgctcctgtacaacgtcacctttgttgtgataattgtgctgca
aaatgtggtgtttgtattccacacatcaccaaatatccagcttgtctggttgatgataac
tttgtttcatcaaatgcatgtctggaaagacaggtgtcaaagcaacaaatggacattgtm
aaagatgaactgacaaaatatcacaagtccatcatgatgcaattggttggatccacagca
aacggtgatgtaaaaaccctcactaacccacaatttatgcttggcttctcaraggtgcaa
atcttgcaagttttgaataacgtacaaagaattttctctatgaaagatgtttataatttt
gtagaaatatgggacagacagcatgcttgtgctatttattccatcattggcttggtattt
ggagacwtagatggcaacagtgctgtgcatgtgttagaggattgtgaagatattgaattc
actgaagacctacttgacgagtggcataatattttacaagatgrtgaattgtatgagatg
attattgacaacatatcattgtcacaactcgaaaactcttcctttgaagatgccggtgaa
atcagttttgatgtgctccmctcagcagttttatctacagtcggaaatatgacactggac
agtttgtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (28)   

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