KEGG   Empidonax traillii (willow flycatcher): 114057972
Entry
114057972         CDS       T05887                                 
Symbol
TRUB1
Name
(RefSeq) LOW QUALITY PROTEIN: probable tRNA pseudouridine synthase 1
  KO
K03177  tRNA pseudouridine55 synthase [EC:5.4.99.25]
Organism
etl  Empidonax traillii (willow flycatcher)
Brite
KEGG Orthology (KO) [BR:etl00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:etl03016]
    114057972 (TRUB1)
Enzymes [BR:etl01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.25  tRNA pseudouridine55 synthase
     114057972 (TRUB1)
Transfer RNA biogenesis [BR:etl03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    114057972 (TRUB1)
 Prokaryotic type
    114057972 (TRUB1)
SSDB
Motif
Pfam: TruB_N TruB_C_2 Pus10_C
Other DBs
NCBI-GeneID: 114057972
NCBI-ProteinID: XP_027740693
Position
Unknown
AA seq 297 aa
MAAREAGGAVLGTAAERLFSLSGLFAVYKPKGPTSAGVLNLLKERLLAEAGVQTNEKKRN
QVLKIGHGGTLDSAAAGVLVVGIGKGTKMLRTMLAGSKKYTAIGMLGKATDTLDATGKVT
EEKPYDQVTKGDLENVLQKFRGHIMQVPPLYSALKKDGERLSTLMKRGEAVEAKPARPVR
VYSLSLQQFQPPLFTLDVECGGGFYVRSLVSDIGKELSTCATMQELTRTKQGPFTLEEHA
LHEDKWTIDEIARSLEHCTALLPREPPHKKLKTEHPGETAAICKISDKLGRGKRLND
NT seq 894 nt   +upstreamnt  +downstreamnt
atggccgccagggaggcgggcggcgcggtgctgggcacggcggccgaaaggctcttctcg
ctcagcgggctcttcgccgtctacaagcccaagggacccacctcggccggcgtgctcaac
ctgctcaaggagaggctgctggcagaagctggtgtgcaaacaaatgagaagaaaagaaat
caggttttgaaaattggacatggaggaactttggacagtgcagcagcaggagttctggtg
gtcggtattggaaaaggaacaaaaatgctgagaactatgctggcaggttccaagaagtac
actgccattggaatgctgggcaaagctactgatacattagatgctacaggaaaagtaact
gaagaaaaaccttatgaccaggtaacaaaaggagatcttgaaaatgtgctgcagaagttc
agggggcacatcatgcaagtcccaccactctattctgctctgaagaaggatggagaaagg
ctctctactctgatgaagaggggagaagcagttgaagcaaagcctgctcggccagtgaga
gtgtacagcctttctcttcagcagttccagccaccactgttcacgctggatgttgaatgt
ggtggtggcttttatgtcaggagcctggtcagtgacattggcaaagagctctcgacctgt
gccactatgcaagagctgacccgcaccaagcaggggccgttcacgctggaggaacacgcc
cttcacgaggacaaatggacaattgatgaaattgctcgatccttggagcactgcacagct
ctgctccccagggagccacctcataaaaaattgaagacggagcatcccggtgaaacggct
gcgatctgtaagataagtgacaagttgggccgaggaaaaagactgaatgattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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