KEGG   Escherichia coli UMNK88 (ETEC, porcine): UMNK88_5118
Entry
UMNK88_5118       CDS       T02001                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
eun  Escherichia coli UMNK88 (ETEC, porcine)
Pathway
eun03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:eun00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    UMNK88_5118 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:eun03019]
    UMNK88_5118 (rnr)
   03016 Transfer RNA biogenesis [BR:eun03016]
    UMNK88_5118 (rnr)
Enzymes [BR:eun01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     UMNK88_5118 (rnr)
Messenger RNA biogenesis [BR:eun03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     UMNK88_5118 (rnr)
Transfer RNA biogenesis [BR:eun03016]
 Prokaryotic type
  tRNA degradation factors
   UMNK88_5118 (rnr)
SSDB
Motif
Pfam: RNB OB_RNB CSD2 S1 HTH_12 RNase_II_C_S1 Rho_RNA_bind OB_Dis3 MetOD2 RNA_pol_Rbc25 Sucrose_synth YqfQ
Other DBs
NCBI-ProteinID: AEE59590
Position
4994969..4997410
AA seq 813 aa
MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR
AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP
DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA
VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG
GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF
VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTAHEKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKPKPKAA
KKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE
NT seq 2442 nt   +upstreamnt  +downstreamnt
atgtcacaagatcctttccaggaacgcgaagctgaaaaatacgcgaatcccatccctagt
cgggaatttatcctcgaacatttaaccaaacgtgaaaaaccggccagccgtgatgagctg
gcggtagaactgcacattgaaggcgaagagcagcttgaaggcctgcgtcgccgcctgcgc
gcgatggagcgcgatggtcaactggtcttcactcgtcgtcagtgctatgcgctgccggaa
cgcctcgacctggtgaaaggtaccgttattggccaccgtgatggctacggctttctgcgg
gttgaagggcgtaaagatgatttgtatctctccagcgagcagatgaaaacctgcattcat
ggcgatcaggtgctggcgcagccgctgggcgctgaccgtaaaggtcgtcgtgaagcgcgt
attgtccgcgtactggtgccaaaaaccagccagattgttggccgctactttaccgaagcg
ggtgtcggctttgtggttcctgacgacagccgtctgagcttcgatattttaatcccgccc
gatcagatcatgggcgcgcggatgggctttgtggtggtggttgaactgacccaacgcccg
actcgccgtaccaaagcggtgggtaaaatcgtcgaagtacttggcgacaatatgggcacc
ggcatggcggttgatatcgctctgcgtacccatgaaattccgtatatctggccgcaggct
gttgagcaacaggttgccgggctgaaagaagaagtgccggaagaagcaaaagcgggccgt
gtcgatttgcgcgatttaccgctggtcaccattgatggcgaagacgcccgtgactttgac
gatgcagtttactgtgagaaaaaacgcggcggcggctggcgtttatgggtcgcgattgcc
gacgtcagctactatgtgcgtccgccaacaccgctggacagagaagcgcgtaaccgtggt
acgtcggtgtacttcccttcgcaggttatcccgatgctgccggaagtgctctctaacggc
ctgtgttcgctcaacccgcaggtagaccgcctgtgtatggtgtgcgagatgacggtttcg
tcgaaaggccgcctgactggctacaaattctacgaagcggtgatgagctctcacgcgcgt
ctgacctacaccaaagtctggcatattctgcagggcgatcaggatctgcgcgagcagtac
gccccgctggttaagcatctcgaagagttgcataacctctataaagtgctggataaagcc
cgtgaagaacgcggagggatctcatttgagagcgaagaagcgaagttcattttcaacgct
gaacgccgtattgaacgtatcgaacagactcagcgtaacgacgcccacaagttaattgaa
gagtgcatgattctggcgaatatctcggcggcgcgtttcgttgagaaagcgaaagaaccg
gcactgttccgtattcacgacaagccgagcaccgaagcaattacctctttccgttcagtg
ctggcggagctggggctggaattgccgggcggtaacaagccggaaccgcgtgactacgcg
gaactgctggagtcggttgccgatcgtcctgacgcagaaatgctgcaaaccatgctgctg
cgctcgatgaaacaggcgatttacgatccggaaaaccgtggtcacttcggtctggcattg
cagtcctatgcgcactttacttcgccgattcgtcgttatcctgacctgacgctgcaccgc
gccattaaatatctgctggcgaaagagcaggggcatcagggcaacaccactgaaaccggc
ggctaccattattcgatggaagagatgctgcaactgggtcagcactgttcgatggcggaa
cgtcgtgccgacgaagcaacacgcgatgtagctgactggctgaagtgtgacttcatgctc
gaccaggtaggtaacgtctttaaaggcgtaatttccagcgtcactggctttggcttcttc
gtccgtctggacgacttgttcattgatggtctggtccatgtctcttcgctggacaatgac
tactatcgctttgaccaggtagggcaacgcctgatgggtgaatccagcggccagacttat
cgcctgggcgatcgcgtggaagttcgcgttgaagcggttaatatggacgagcgcaaaatc
gactttagcctgatctccagcgaacgcgcaccgcgcaacgtcggtaaaacggcgcacgag
aaagcgaaaaaaggcgatgcaggcaaaaaaggcggcaagcgtcgtcaggtcggtaaaaag
gtaaactttgagccagacagcgccttccgcggcgagaaaaaaccgaagccgaaagcggcg
aagaaagacgcgagaaaagcgaaaaagccatcggcgaaaacgcagaaaatagccgcagcg
accaaagcgaagcgtgcggcgaagaaaaaagtggcagagtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (12)   
   Pfam (12)   
All databases (22)   

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