KEGG   Ficedula albicollis (collared flycatcher): 101810620
Entry
101810620         CDS       T02815                                 
Symbol
COL4A4
Name
(RefSeq) collagen type IV alpha 4 chain
  KO
K06237  collagen type IV alpha
Organism
fab  Ficedula albicollis (collared flycatcher)
Pathway
fab04510  Focal adhesion
fab04512  ECM-receptor interaction
fab04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:fab00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    101810620 (COL4A4)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    101810620 (COL4A4)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    101810620 (COL4A4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:fab04147]
    101810620 (COL4A4)
   00536 Glycosaminoglycan binding proteins [BR:fab00536]
    101810620 (COL4A4)
Exosome [BR:fab04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   101810620 (COL4A4)
Glycosaminoglycan binding proteins [BR:fab00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   101810620 (COL4A4)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 101810620
NCBI-ProteinID: XP_005051392
Position
9:complement(10191241..10249665)
AA seq 1681 aa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NT seq 5046 nt   +upstreamnt  +downstreamnt
atggcattaacaaaggattcatttgaacggattaagtggcttatcacagctgcctggtgg
ctgctgattgttttttcaactcaaggaactgatgggggaggatatgcatatattgatcca
tgtgggggacaggattgttctgtttgtcggtgctttccagaaaaaggatccaggggtcag
cctggtgagctgggggctcaaggtccaattgggtccttgggatctacaggaccagctggt
ctgccaggggagaaaggacagagaggtgagaatgggcagcctgggccagctggagaaaaa
ggtgacaagggcccaactggagtcccaggatttcctggtttagatggtgttcctggcctc
ccaggaagggaaggacccagaggcaagcatggtttggatggctgcaatggctcaagggga
gacccaggacttccaggagaaaacggttatatgggaccaagaggtccttatggaattcaa
gggcaaaaaggagaaaaaggaaattcagtgtatatttcacattttggaaaaggactacca
ggagagagaggtgatcctggtccccctggcatgcctggacctagagggccaagaggtaca
atgggcccatctggatacccaggccatccaggcttgcctggtattccaggttaccctggt
ttgccaggtgaacagggaaatccagggattggagtagatggacaaaagggggagccgggc
gacatcggactgcctgggccgcctgggtcaccactgttagttggacctcctggagctcag
ctgttcaaaggacaaaagggccaaaaaggattacctggggtaacaggatacagagggcca
cgtggacccaaaggcatacttgggagaggagaaaagggtgagaaaggccttcctggattc
cctggactgcggggtcatcctggttcttatggacctgcaggttttcctggaatgaagggt
gaaacaggatttgctggttttcctggacaacctggctatccaggcatacagggggatcca
ggagataaagggcccccaggtcctcctggagctgttggaactccactgccttctataaaa
ggtccacgaggagatcctggatttccaggtcctgtgggtgaaatggggtcagttggacca
attggtccttcaggccttctaggaagaccaggatatgatggaacaagtcttcctggcctg
ccaggagtaggtggggcaccaggacctcaaggttttcaaggggaccctggtttgcctgga
acaggtgaattaatcccaggaagaccaggacttcctggaccaccaggcccaccagggcag
ccaggaagacaaggcttacctggactacccagtgtaatctgtactgacagagggatccct
ggagaacctggagcaaaaggtcagataggccttccaggaagaaaaggtgctaaaggagag
aagggaagtcaaggcttctgctcatgtagtgctggtcctcctggtccccgtggtgtgcaa
ggacctccaggtgctgaaggaaggaaaggacaaatgggataccctggaagacacggggaa
aagggcgacccaggctcatccggggcagtgggaccaccagggctccctgggactcctggt
tttgctggacagcatggggaaaaaggagagaagggagatcctggaagagttagaataaaa
ggattaaaaggtgaaagaggacctactgggcttcaaggatttccaggccaaagaggtctt
gatggcagagatggggaactaggattgccaggggaaaaaggagctgagggcgattctgga
gtagcagttccgggtgataaaggattccctgggctcccaggaactcctggggtaaaaggc
cagatgggattgcctggtttgggacttcctgggtctccaggagccagaggtagccccgga
gactttggtgatatgggtaatgttgggccacctggtccaaaaggccagaaaggtgaaact
gtctgcattacatcaccatatcctggaaatccaggtcccccggggtttaaaggtgttcaa
ggacagaagggtttaaaaggactccctgggcatcctggaccaactggctttgatgggcaa
aaaggctatcgaggaaggccaggagcaggaatccctggaccagaaggctttcgaggcaca
gctggtgatcctggtgatgaaggtgaaagaggatctacaattgatggcaaaaatggcctt
ccaggtccacctggcatagatggtcagaaaggtcttccaggtgacaccacttatggccct
ccaggaatcccaggcaacaggggactgccaggaccccccggtgcacagggagcaaggggt
aatccaggcattcctggacttcaaggacaacctggcaccccaggatttccaggtgccaaa
ggttttagaggcccagaaggtgatgtaggagcaccaggctgtccaggcttccctggctca
ccatgtgtcccaggcttaccaggaccacctggactcagaggtgtcatgggcctgccagga
cctcaaggcttaccaggccttaaaggtcagaggggagacaggggcctggctgggccacct
ggaatcaaaggtctcaaaggctctttgggctcacgaggtctcccaggtcctccaggctca
cgaggtcccccaggacttccaggcaataaaggacccattggcttccctggagaaacagga
agcaaaggcattcaaggaccccggggattcccaggactcccaggaatacaaggcccaatg
ggaatctttggtgtaaaaggtgaagaaggaaaaatgggtctacctgggcctactggagaa
tgtggagatatgggaataaaaggtgaaagggggcctccaggagacagcggctgcgtcaac
ctccgtcttgagaaaggacaaatgggggacccagggtttcctggtgagcatggattgaga
ggtgaaagaggtgaaaaaggcaatactggtttcagaggcacacgaggatttccagggaag
aatggtgttccaggactgccaggtgaccaaggtgacactggagtgatggggtttccagga
tcacggggtttgcctggaccaaaaggccttcaaggaattacaggttttcaaggagaacca
ggtgaccagggtgatgttggcttaccaggaaaccctggatatccaggactgattggcccc
aaaggatgtaaaggcaagagaggtgacccaactcctctgcttggtgcacacggtcggaaa
gggcctccaggagatccaggattgccaggatttagtggatttccaggggagaagggttta
ccaggtatccaaggacagcctggaagaccaggatccaagggtgaccctggatatccaggg
ccgcctggattgccaggagctacaggtcctcaaggattgccaggagaacgtggagaagat
gggaaacctggaattttgggacctccaggattgcaagggttgcctggatcccaaggcaga
aaaggtcttcctggactgcctggactggatggcttggatggactaaaaggtcaaaagggt
tctgcaggagctccaggtcagagtgagacagggcccccaggatactcaggagaaattgga
ccaaaaggagacagaggtgaacctggatggcctggtatttctattccaggcccccctgga
gaaaggggattcccaggatttccaggtagaagaggacctgttggacccactggacctatg
ggaagatctcctgatagtgcttcccctggtcctccaggggatcaaggattacctggttta
gatggaatcagaggtgatcctgggaatcctggtccccctggagagactgtctttgtgcga
ggagatccaggtgatagtggcatgcaaggggcaccaggtaatcctgggccacgaggacaa
cagggagccaggggccctccagggagccaaggaagagaaggcccaaagggtcctatgggg
gtccatggcccacagggtccacctggtgctataggacaaccaggagaccaaggttttcca
ggaagacctggtcccagaggtcccacaggtttcataggtgaccctggtgaaccaggcaaa
gtagatgattcatgccctaaaatcccagggcctcctggggaagcaggacaaagaggagag
gatggctctgcaggattaccagggccaataggccaccctggaccccaaggcataaaaggt
gaagaaggatcatgtggcctgccaggtcaggatgggttacctggggcacctggaccacca
ggggaccaagggagccgaggagagcaaggatatgctgggccacaaggtccacctggccag
actggtgtcccaggacaaccaggcccccaaattagatctgcaagtggattcttgctcgtc
ctgcacagtcagtcagacagagaaccactctgcccacaggggatgccaaggttatggact
ggctatagtctgctgtacctggaaggacaagagaaagcccacaatcaagatcttggtctg
gcaggatcctgcctgcctgtgtttagcaccatgccatttgcctactgcaacatcaaccag
gtgtgttactacgccagccgcaatgacaagtcctactggctgtccagcgccgcgccgctg
cccacggcgccgctggccgaggaggaggtccagccctacatcagcaggtgtgctgtgtgc
gaggccccagcacaggcagtggcactgcacagccaggaccagtccattcctccctgccca
cccaactggaggagcctttggataggatactcttttctgatgcacactggatctggtgac
cagggaggtggacagtcccttatgtcacccggaagctgcctggaagacttcagatcagca
ccattcatcgagtgccagggccagcggggaacgtgtcagttctttgctaatgagtacagt
ttctggctgaccactgtgatgcctgagctgcagtttgcatcagcccccctgtcagggact
cttaaagaaggacaagagcagaggaaaaaaatcagtagatgccaggtatgcctgaagcat
ggctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (51)   
   KEGG ORTHOLOGY (1)   
   RefGene (47)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (64)   

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