KEGG   Fragilariopsis cylindrus: FRACYDRAFT_181129
Entry
FRACYDRAFT_181129 CDS       T04784                                 
Name
(GenBank) putative ATP-dependent RNA helicase
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
fcy  Fragilariopsis cylindrus
Pathway
fcy03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:fcy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    FRACYDRAFT_181129
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:fcy03041]
    FRACYDRAFT_181129
Enzymes [BR:fcy01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     FRACYDRAFT_181129
Spliceosome [BR:fcy03041]
 Complex C
  Other components
   Step II factors
    FRACYDRAFT_181129
SSDB
Motif
Pfam: OB_NTP_bind HA2_C HA2_N Helicase_C DEAD
Other DBs
NCBI-ProteinID: OEU21241
JGI: 181129
UniProt: A0A1E7FST2
Position
Unknown
AA seq 607 aa
MIGCTQPRRVAAVSVSKRVAEEYGCALGEQVGYSIRFEDVTSSDTIIKYMTDGMLMREYL
ADNDLKRYSALMLDEAHERTIHTDVLFGLLKDLCRRRPDMKIIVTSATLDAEKFSTYFFQ
CPIFTIPGRTFPVEILYTKEPESDYLDACLITVMQIHLSEPAGDVLVFLTGQEEIDTCCE
TLYTRMQALGDLAPDLIILPVYSALPSEMQSRIFEPAPIGSRKCVVATNIAEASLTIDGI
YYVVDPGFSKQKAFNPKLGMDSLVVTPISQASARQRAGRAGRTGPGKCYRLYTEHAFKTE
MLSTNVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPVATLVMALETLYALGALDEEG
LLTRLGRKMAEFPLEPNLSKMLILSVDLGCSEEILTITSMLSVESPFYRPKDKQSQADMR
KAKFHQAEGDHLTLLAVYKGWEAAKFSSPWCFENFITARSMKRAQDVRKQLVTIMDRYRL
LLISAGKNYKLICRAITAGFFTNTAKKDPQEGYRTLVDQNPVYIHPSSALFNKNPEYVIY
HELVLTTKEYMRNIMVIDAKWLTELAPNFYKSADPNKITKQKRFEKIEPLVDRFNPKDSW
RLSRRKG
NT seq 1824 nt   +upstreamnt  +downstreamnt
atgatcgggtgtacgcagcctcgtcgtgtcgctgcagtctcagtctctaaacgtgttgca
gaagaatacggttgcgcattaggagagcaggtgggttattcaattcgattcgaagacgta
acatcatccgataccattatcaagtatatgacggatggtatgctcatgagagaatacttg
gcggataatgatctcaaacggtactctgcccttatgctagatgaggcccacgagcggacg
atccataccgatgtcctctttggcctattgaaagatctttgtcgtcgaagaccggatatg
aaaatcatcgtgacttctgcgacgcttgatgcagaaaagttttcaacatatttctttcag
tgtcccatcttcacaattccggggagaacatttcccgttgaaattttgtataccaaagaa
ccagaaagtgattatttagatgcttgtctgatcactgtcatgcagatccatctatcggag
cccgcaggagatgttttagtatttctgaccggtcaggaggagattgatacgtgctgtgag
acgctatacacacgaatgcaagctttgggtgatttggcacccgatctaatcattcttccg
gtctattccgcattgccatccgaaatgcagtcacgaatcttcgaaccggctccaatagga
tctcggaaatgcgttgtggcgactaatattgcagaagcgtctttaacgattgatgggatc
tactatgttgttgatcctggcttctcgaaacagaaggcatttaaccccaaactcggtatg
gactcgttagtagtgacgcctattagtcaagcttctgcgaggcaaagggcaggacgagca
gggagaacgggtcccggaaaatgctacagattgtacacggaacacgcatttaagacggaa
atgttgtcgacgaatgttccagaaattcaaagaacaaatcttggtaatgttgttttgcag
cttaaagcaatgggcattaatgatttacttggatttgatttcatggacccaccccctgtc
gcaacacttgtgatggctcttgaaacgctatacgcgcttggtgcgttggatgaggagggc
ttgctaacgagattgggaagaaagatggcagaattccccttggaacctaatctatctaag
atgttgattctttcggttgatttaggttgctcggaggagatcttgaccattacttctatg
ctgagtgtggaaagccccttctacagaccaaaagataagcagtcacaggctgatatgaga
aaggctaagtttcatcaagcggaaggtgatcaccttacgctcttagcggtgtacaagggt
tgggaagcagctaaattttctagcccttggtgttttgagaattttattactgcaagaagc
atgaaaagagcacaagatgttcgaaagcaattagtgaccattatggaccgatatcgtttg
ttattaatcagcgccgggaaaaattataagctcatatgtagggctattacggcaggtttc
ttcacaaacactgccaagaaagatccacaggaaggttatcgaaccttagtagaccaaaat
ccagtgtatattcatccatcctctgcccttttcaacaaaaatcctgagtatgtgatttac
catgagttggtcttgactacgaaggagtacatgagaaatattatggtcatcgatgctaaa
tggttgacagagctggctcccaacttttataagtcagcagatccgaataagataactaaa
cagaaacgcttcgaaaagattgaaccactcgtcgatcgcttcaatccaaaggattcttgg
cgtctgtcaagacgaaaaggttaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (71)   
   KEGG ORTHOLOGY (1)   
   RefGene (67)   
   NCBI-PROTEINID (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (82)   

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