KEGG   Fragilariopsis cylindrus: FRACYDRAFT_184428
Entry
FRACYDRAFT_184428 CDS       T04784                                 
Name
(GenBank) DEAD-domain-containing protein
  KO
K12858  ATP-dependent RNA helicase DDX23/PRP28 [EC:5.6.2.7]
Organism
fcy  Fragilariopsis cylindrus
Pathway
fcy03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:fcy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    FRACYDRAFT_184428
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:fcy03041]
    FRACYDRAFT_184428
Enzymes [BR:fcy01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     FRACYDRAFT_184428
Spliceosome [BR:fcy03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    FRACYDRAFT_184428
 Complex C
   U5 SnRNP specific factors
    FRACYDRAFT_184428
SSDB
Motif
Pfam: DEAD Helicase_C ResIII P-loop_SecA
Other DBs
NCBI-ProteinID: OEU17881
JGI: 184428
UniProt: A0A1E7FI79
Position
Unknown
AA seq 488 aa
MNSFENSIDTKPLQEMTSRDWRIYRENHNIVCKGGKAPPPLRYFNDGSLLHPSLLKALKE
IMYYDKPTPIQRQAIPIGMQRRDLIGIAETGSGKTCAFGIPLIQYILQLPSSVTTRDKVA
EQGPLAIVLAPTRELALQIDGEFQKLLTFCVRPNQILSACIVGGQNMTVQAQKLRDGIHI
VVGTPGRINECLELTYMVLNQCSYCVLDEGDRMIDMGFAPQLESILDHMGGSLKSENESE
AYEQEKQDLQTLQTLQQQQEENSSTATIELPKHRVTAMFSATMPLEVEQMAKKYLRFPAV
ISVGDRDSRKNARIEQKVLFLSSPSAKEGALRKLILDPRFMREKVLVFVNEKKHCEGVSR
QIERIGRRCVVLHGGKSQEEREKNLQLFKQGGVILVATDVAGRGLDISNIAHVINYDLPG
RSIDSYSHRIGRTGRAGKAGLATSLLTDDDEGIMAPLKAYLESTGSVVPDKLARHPACNG
GSDNNVIY
NT seq 1467 nt   +upstreamnt  +downstreamnt
atgaattcatttgaaaatagtattgatacgaaaccacttcaagaaatgacaagtcgtgat
tggagaatatatcgtgaaaatcataatattgtttgtaagggcgggaaggcaccaccacca
ttacgttattttaatgatggttcattattacatccaagtttattaaaagcattaaaagaa
attatgtattatgataaaccaacgcctattcaacgtcaggctataccaattggtatgcaa
cgtcgtgatttaattggtattgcagaaacaggatcaggtaaaacatgtgcatttggtatc
ccattgatacaatatatattacaattgccttcctctgttacaacacgagataaagtggct
gaacagggtccacttgctatcgtattagccccaacacgtgaattagcattacaaattgat
ggtgaatttcaaaaattattaacattttgtgtaagaccaaatcaaattttatcggcatgt
attgttggtggacaaaatatgacagtccaagcacaaaaattacgtgatgggatacatatt
gttgtaggtacgcccggtcggatcaatgaatgtttagaattaacatatatggtattaaat
caatgttcgtattgtgtactagatgaaggtgataggatgattgatatgggtttcgctcct
caacttgaaagtatattagatcatatgggtggttcgttgaaaagtgaaaatgaaagtgaa
gcatatgaacaagaaaaacaagatttacaaacattacaaacattacagcaacaacaagaa
gagaattccagtacagcaacaatcgaattaccaaaacatcgtgtaacagcaatgttttca
gcaacaatgccattagaggtagaacaaatggcaaagaaatacttaagatttcctgctgtt
attagtgtaggtgatcgtgattcacgaaagaatgcacgtattgaacaaaaggttctattt
ttatcgtcaccaagtgcaaaggagggtgcgttacggaaattaatactagatccaagattt
atgcgtgaaaaggttttggtatttgtaaatgaaaagaaacattgtgaaggtgtatcacga
caaattgaacgtatcggtcgtagatgtgttgttttacatggtggtaaaagtcaagaagaa
cgtgaaaagaatttacaattatttaaacagggtggtgttatattagtcgcaacagatgtt
gctggtcgtggacttgatatatcaaatattgcacatgttatcaattatgatttgccagga
cgttctattgattcctacagtcatcggattggtcgtacaggacgagctggtaaggctgga
ttagcaacctcattactaacagatgacgatgaaggtataatggcaccattaaaagcatat
ttagaaagtaccggtagtgtcgtacctgataaacttgcacgtcatcctgcttgtaacggt
ggttctgacaataatgtcatttattag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (42)   
   KEGG ORTHOLOGY (1)   
   RefGene (38)   
   NCBI-PROTEINID (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (53)   

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