KEGG   Fragilariopsis cylindrus: FRACYDRAFT_206499
Entry
FRACYDRAFT_206499 CDS       T04784                                 
Name
(GenBank) ring-box protein
  KO
K03868  E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
Organism
fcy  Fragilariopsis cylindrus
Pathway
fcy03420  Nucleotide excision repair
fcy04120  Ubiquitin mediated proteolysis
fcy04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:fcy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    FRACYDRAFT_206499
   04120 Ubiquitin mediated proteolysis
    FRACYDRAFT_206499
  09124 Replication and repair
   03420 Nucleotide excision repair
    FRACYDRAFT_206499
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:fcy04121]
    FRACYDRAFT_206499
   03400 DNA repair and recombination proteins [BR:fcy03400]
    FRACYDRAFT_206499
Enzymes [BR:fcy01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.32  cullin-RING-type E3 NEDD8 transferase
     FRACYDRAFT_206499
Ubiquitin system [BR:fcy04121]
 Ubiquitin ligases (E3)
  UBL E3 ligases
   FRACYDRAFT_206499
  Multi subunit Ring-finger type E3
   SCF complex
    Ring finger protein
     FRACYDRAFT_206499
   Cul2 complex
     FRACYDRAFT_206499
   Cul3 complex
     FRACYDRAFT_206499
   Cul4 complex
     FRACYDRAFT_206499
   Cul7 complex
     FRACYDRAFT_206499
   Cul8 complex
     FRACYDRAFT_206499
   Cul9 complex
     FRACYDRAFT_206499
DNA repair and recombination proteins [BR:fcy03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      FRACYDRAFT_206499
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      FRACYDRAFT_206499
SSDB
Motif
Pfam: zf-rbx1 zf-ANAPC11 zf-RING_2 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_5 zf-C3HC4_3 zf-RING_16 zf-RING_11 zf-C3HC4_4 zinc_ribbon_16 Prok-RING_4 zf-Nse zf-RING_4 zf-RING-like Rtf2 zf-C3H2C3 TerY_C Baculo_RING
Other DBs
NCBI-ProteinID: OEU19456
JGI: 206499
UniProt: A0A1E7FMU3
Position
Unknown
AA seq 127 aa
MADASVDVPMEDAPPAKEAAVCKPVGSAAPRFEIKKWNAVAMWSWDICADTCAICRNSLN
EPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNKEWDFAKIERIP
GYGQLAS
NT seq 384 nt   +upstreamnt  +downstreamnt
atggccgatgcaagtgttgatgttcctatggaagatgcgccaccagcaaaagaagctgct
gtatgcaagcccgtaggaagtgctgctcctcgatttgaaatcaaaaaatggaacgctgtt
gcaatgtggtcttgggatatctgtgcggacacgtgtgctatctgtcgtaactctctgaac
gagccatcgattgaatatcaagcgaatccgtctcctaccaatgataatggactatcgatt
gcctttggaaattgtggtcacgtcttccatcttgattgtatccagcgttggcttaagact
agaagtgtgtgtcctctctgtaacaaagaatgggacttcgcgaagattgaacgtattcct
ggctacggtcaacttgcaagttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (205)   
   KEGG ORTHOLOGY (1)   
   RefGene (201)   
   NCBI-PROTEINID (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (20)   
   Pfam (20)   
All databases (235)   

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