KEGG   Fragaria vesca (woodland strawberry): 101301856
Entry
101301856         CDS       T02666                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
fve  Fragaria vesca (woodland strawberry)
Pathway
fve03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:fve00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    101301856
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:fve04121]
    101301856
   03036 Chromosome and associated proteins [BR:fve03036]
    101301856
Enzymes [BR:fve01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     101301856
Ubiquitin system [BR:fve04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    101301856
Chromosome and associated proteins [BR:fve03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     101301856
    Noncanonical PRC1 (PRC1.1)
     101301856
    Noncanonical PRC1 (PRC1.3/1.5)
     101301856
    Noncanonical PRC1 (PRC1.6)
     101301856
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_5 zf-RING_4 zf-rbx1 zf-RING_UBOX zf-UDP zf-C3HC4_5 zf-RING_10 DUF4695 zf-RING_6 zf-C3HC4_4 DUF6739
Other DBs
NCBI-GeneID: 101301856
NCBI-ProteinID: XP_011462022
Position
LG3:6839076..6843151
AA seq 425 aa
MCYGSTFICCSHVYIVFLLFAAISTFVPYLPPTSLKIIIIRKVIDPFVCVGIIRKTRTVM
ECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPKYDALIAAIYPDIDKYEEEEL
AFHEEEKARNKQIQASIAQTFRRQSEALGRKRTTAKATAAAFMRKSQGNYKNLRRRRNNK
NAVEIQGSDDNEEANGNDGGKDSSSDERTEPRPKRPKRWTGARYYQRSPATANADGDYEN
DYEVNREVMGSSVGFVGSPERLAWGKGGLRSHTRYGSSSGANGKNARSRISKLVDYLRNL
EANDKGLDIHLLLVSFDEQRIPSLQRRYLCCRPTLSVGQLCQYVAEQTALQPDEVEIYLI
KEVQAKVSPSDPTDALVSTSGVLDSSNNTLLLLRDDESLAEVQARHLTRGHLLLAYQKKW
NLNRG
NT seq 1278 nt   +upstreamnt  +downstreamnt
atgtgttatggttcgacttttatttgctgtagccatgtctacatagttttcttattattt
gctgcaataagtacttttgtgccataccttccccctacctctcttaaaattattataatt
agaaaagtcattgacccttttgtttgtgtagggatcattaggaaaacaagaacagtgatg
gaatgcctgcaccgcttctgcagggaatgcattgacaagtccatgcggcttgggaacaat
gaatgccctgcatgccgcacacattgtgcgagtcgtcgctctttgagagatgacccaaag
tatgatgccttaattgcagctatatatccagatattgacaagtatgaggaagaggaatta
gcttttcatgaagaagagaaggctcgcaataagcagatccaagcttccattgcccagaca
tttcgacgacaatccgaagcacttggtaggaagcgaactacagcaaaagccactgccgct
gcatttatgaggaaatcccaaggtaactacaaaaatttgaggcggagaaggaataataaa
aatgctgttgaaattcaaggatctgatgataatgaggaggcaaatggtaatgatggaggg
aaagattcatcttctgatgagcgcacagaaccaagaccaaaaagacccaaaagatggaca
ggagctcgatattatcagcgttcaccagcaactgcgaatgcagatggtgattatgaaaat
gattatgaggtaaatagagaagttatgggttcatctgtggggtttgttggcagtccagaa
aggcttgcatggggtaaaggtggcttgcgtagtcatacaagatatggaagttctagtggt
gccaatggtaagaatgccaggagccgcatttctaagttggtggattatctccgcaacttg
gaagctaatgataaagggttggatatccacctcctactggtttcttttgatgaacaaaga
atacctagtttgcagaggcggtatctttgctgcaggcccaccctgtcagttggacaacta
tgtcagtatgttgctgagcaaactgcactgcaacctgatgaagtggaaatatacttaata
aaggaagtacaagccaaagttagcccatcagaccctacagatgctctggtttctacttct
ggtgttttagattcaagcaataacacacttcttctgttaagagacgatgaatcattggca
gaagttcaagcgcgtcatctcactcgtggccatctgcttttggcatatcagaagaagtgg
aacttaaaccgtggctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (14)   
   Pfam (14)   
All databases (36)   

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