KEGG   Geitlerinema sp. PCC 7407: GEI7407_0220
Entry
GEI7407_0220      CDS       T02366                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
gei  Geitlerinema sp. PCC 7407
Pathway
gei03030  DNA replication
gei03410  Base excision repair
gei03420  Nucleotide excision repair
gei03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:gei00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    GEI7407_0220
   03410 Base excision repair
    GEI7407_0220
   03420 Nucleotide excision repair
    GEI7407_0220
   03430 Mismatch repair
    GEI7407_0220
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gei03032]
    GEI7407_0220
   03400 DNA repair and recombination proteins [BR:gei03400]
    GEI7407_0220
Enzymes [BR:gei01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     GEI7407_0220
DNA replication proteins [BR:gei03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     GEI7407_0220
DNA repair and recombination proteins [BR:gei03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     GEI7407_0220
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     GEI7407_0220
   MMR (mismatch excision repair)
    DNA ligase
     GEI7407_0220
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      GEI7407_0220
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD BRCT_2 PTCB-BRCT zf-ribbon_3 RNA_ligase RNA_pol_A_CTD
Other DBs
NCBI-ProteinID: AFY64725
UniProt: K9S3I2
Position
complement(250660..252714)
AA seq 684 aa
MTVTPQVEQRIRQLQQQLQHASYAYYVLDNPVMEDSVYDRLYRELQDLETQYPELIMPDS
PTQRVGERPATQFQSVQHQVPLYSLENAFNGDELQAWDQRWRRLAPPGAIATYVCELKID
GSAIALTYENGVLVRGATRGDGVAGEEITQNIKTIRSIPLKLQGDNPPPRVEVRGEAFLP
LDVFDQINQEREQAGEARFANPRNAAAGTLRQLDSRVVAQRRLDFFAYTVHFPGLAEEEQ
PLDERSQWAALEWLHQVGFRVNPERERCASLAEVQAYCDRWFTARQELAYMTDGVVIKLN
DFGLQEQLGFTQKFPRWAIALKYPAEEAPTQIDRIVFQVGRTGAITPVAEFQPVHLAGTI
VSRATLHNGDRIAELDLHLGDTIIVRKAGEIIPEVVRVMTDLRPEAALPVQMPTHCPECG
QPVIKPSDEAVTRCINASCPAILRGALIHWASRDALDINGVGEKLVQQLVDRQVVQCVAD
LYDLSVDDFQQLERMGQKSAEKLVKAIADSKAKPWSRVLYGLGIRHVGSVNAQTIAENFP
SVEELSSAESGAIAAIYGIGPEIAQAVAQWFQIPANQDLIRRLQAAGLSLAQTVVSTAPP
AQAALFAGKTFVLTGTLPTLSRDEAKALIQQAGGKVTGSVSAKTDYLVVGEDAGSKLTKA
IALGVAQLSEADLLALLNAASSQP
NT seq 2055 nt   +upstreamnt  +downstreamnt
gtgacggttactccccaggttgagcagcggattcggcaacttcagcagcagctccagcac
gccagctacgcatactatgtgctggacaaccccgtgatggaagacagcgtctacgatcgc
ctgtaccgcgaactgcaagatctggagactcagtaccccgagctgatcatgccggatagc
ccgactcagcgagttggcgagcggcctgcgacccagtttcagtcggttcagcaccaggtg
ccgctctacagcctcgaaaatgcgttcaatggggacgagctgcaggcctgggatcagcgg
tggcggcggttggcgccaccgggggcgatcgcgacctacgtgtgcgagctcaaaattgac
ggttcggcgatcgcgctgacctacgaaaacggggttttggtgcggggggcaacgcgagga
gacggggtcgcaggcgaagaaatcacccaaaatatcaagaccattcgctcgattccgctg
aagctccaaggcgacaatccgccgccgcgggtcgaggtgaggggcgaggcgtttttgccc
ctcgatgtttttgaccaaattaaccaagagcgggaacaagctggcgaggcgcgctttgcc
aatcctcgcaatgccgccgcagggaccttgcggcagctagattcgcgggtggtggcccag
cgccgcctcgacttttttgcctatacggttcattttccgggtttggcggaggaggagcag
cctctggatgaacgcagtcaatgggccgcgctggagtggctgcaccaggtcggttttcgg
gtgaatccggagcgggagcgctgtgcgtcactggcggaggtgcaggcctactgcgatcgc
tggtttacggcgcgccaagagctggcctatatgaccgatggcgtggtgatcaagctgaat
gactttgggctccaggagcagctaggcttcacccaaaagtttcctcgctgggcgatcgcc
ctcaagtacccagcggaggaggctcccacccaaatcgatcgcattgtgtttcaggtgggg
cgcacgggggcgattacgccggtggcagagtttcagccggtgcacctggcggggacgatc
gtgtctcgggcgacgctccacaacggcgatcgcattgccgagctggacctccacctgggc
gacacgatcatcgtccgcaaggccggcgagattattcccgaagttgtgcgggtgatgaca
gatctgcgccccgaagcagcgctgccggtgcagatgccgacgcactgcccagagtgcggc
cagcccgtgatcaagccaagcgacgaagcggtgactcgctgcatcaatgcgtcttgtccg
gcgattttgcggggggcgctcattcactgggcgagccgggatgcgctggacatcaatggg
gtaggcgaaaagctggtgcagcagctggtggaccggcaggtggtgcagtgcgtggcggac
ctgtatgacctgagcgttgacgactttcagcagctggagcgcatgggccaaaagtccgca
gagaagctagttaaggcgatcgccgattcgaaagcaaagccctggtcgagggtgctctat
ggcttggggattcgccatgtgggcagcgtcaatgcccaaacaattgctgaaaattttccg
tcagtggaggagctttcgagtgctgagtcaggggcgatcgccgcgatctacggcatcggc
ccagaaattgcgcaggccgtagcgcaatggttccagattccggccaaccaggatttgatt
cgtcgactccaggcagccggtctttccctagcccaaaccgtcgtcagcactgcaccaccg
gctcaggctgccctcttcgcgggcaaaacctttgtcttgaccggcacgctgccgaccctg
agccgcgacgaagccaaggccttgattcagcaggcgggcggcaaggtaaccggatcggtc
agcgccaaaacggactacctcgtggtcggtgaggacgctggctccaagctaaccaaggcg
atcgccctcggcgttgcccagctgtccgaagcagatttgctggctcttctcaatgccgct
agctcacagccgtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (39)   

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