KEGG   Geobacter sp. M21: GM21_4133
Entry
GM21_4133         CDS       T00933                                 
Name
(GenBank) DEAD_2 domain protein
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
gem  Geobacter sp. M21
Pathway
gem03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:gem00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    GM21_4133
  09124 Replication and repair
   03420 Nucleotide excision repair
    GM21_4133
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gem03021]
    GM21_4133
   03400 DNA repair and recombination proteins [BR:gem03400]
    GM21_4133
Enzymes [BR:gem01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     GM21_4133
Transcription machinery [BR:gem03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     GM21_4133
DNA repair and recombination proteins [BR:gem03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     GM21_4133
SSDB
Motif
Pfam: Helicase_C_2 DEAD_2 DEAD ResIII ATPase Helicase_C
Other DBs
NCBI-ProteinID: ACT20148
UniProt: C6E9P8
Position
complement(4724809..4727205)
AA seq 798 aa
MKPAPNLINIPVGYFALPVPRTGSIEPRSGYDRSTAEGREIHLRIQKKRAQADSSYQAEV
PVSRVFERGGYQFQVSGRLDGVFRHAPPLIEEIKSCFNLWELRRRLAHAGTDEPYSLQLL
TYGYFHWLEHGVIPRLSFHLVSSRNGASEDLPVRLDLEAYRVWLELRLDELAREADEASK
RARRRRKAAKEFPFPFAAPRPGQLELMGEIESGMVEGRAMLIQAPTGLGKTAGVLHPVLK
EALGRGQTVCYVTPKNSQHEVAEDAMKRFRQSGVRLRSLTVTAKGRICFMNEPVCTPDYC
EYARDYYGKLARHGVVELMAGKRKLKERTFRDFGEKYQLCPFELQIEAVPLADVVICDYN
YVFAPRSALGRAAALAVEQSGKPNLVIDEAHNLPSRAMDYYSPRLSSALLDGMRGDLAEI
PNPFRRDALELLDECLAAVASCGGSGKGMRPVKIEPPLAPFLELDGRLRALLSRYLEADV
EIRQKDPVLKLSHYWGEFAEILEFATASKRREFFTSYEPHSGGGSVKITCCDASALIADR
YGEYQQVVAFSATLKPFDYYAKLSGLDPEQVRCAEFQSPFPSSLRKLMIIPQISTRYSQR
ERNYGRIADALARVVALKSGNYLAFFPSFVFLERVAELFRAPEGFEVLLQERKMSGARVT
EILERLRAGNAPTLVFAVQGGSLSEGVDYAGDMVIGAFVVGPPLPNFDLEREEMRGYYQR
HYGNGYQYAYTIPAMAKAIQAAGRVIRSETDRGLIVLMDDRFLREEYSSAMPGDWFESGA
SELVSEAILSDIREFWGR
NT seq 2397 nt   +upstreamnt  +downstreamnt
atgaagcctgcacctaatctcatcaacatcccggtagggtatttcgcccttcccgttccc
cgcaccgggagcatcgagccccgttccggctacgaccgctccaccgcggaggggcgcgaa
attcaccttaggatccagaaaaagcgcgcgcaggcggacagcagctaccaggccgaagtg
ccggtcagccgcgtcttcgaaaggggagggtaccagttccaggtgagcggccgcctggac
ggggtcttccgccacgccccccccttgatcgaggagatcaagagctgcttcaacctgtgg
gagctcaggcgccggttggctcacgccggcacggacgagccttattcgctgcagcttctc
acctacggctacttccattggctggagcacggcgtgataccgcgcctctccttccacctc
gtgtcctcccgcaacggcgcctccgaggatctcccggtgcgactggacctggaggcgtac
cgggtctggctggagctgcgcctggacgagctggcgcgggaggcggacgaggcctcgaag
cgcgcccgaagaaggaggaaggcggcaaaggagttcccttttcccttcgccgccccccgc
cccgggcagcttgagctgatgggggagatagagtccggcatggtggaggggcgtgccatg
ctgatccaggcgccgaccgggctgggaaagaccgcgggggtcctgcacccggtgctgaag
gaggcgctcgggcgcggccagacggtctgctacgtgacgccgaaaaacagtcagcacgag
gtggcggaggacgccatgaagcgttttcggcagtcgggggtgcggctgcgttcgctcacc
gtgaccgcgaagggcaggatctgtttcatgaacgaacctgtctgcacgccggactactgc
gagtacgcgcgcgattactacggaaagctcgcccggcacggcgtagtcgagctgatggcc
gggaaaaggaaactgaaggagcggactttccgcgatttcggggagaagtaccagctttgc
cccttcgagttgcagatcgaagcggtgccgctggccgacgtcgtcatctgcgactacaac
tacgtcttcgcccccaggtccgcgctggggcgggccgcggcactcgccgtggagcagagc
gggaagccgaacctggtgatagacgaggcgcataacctcccctcccgcgccatggattac
tactcccccaggctttccagcgcgcttttggatgggatgcggggcgatctggcggaaatt
cccaacccatttcggcgcgacgcactggagcttttggatgaatgcctggcggcggtggcg
tcctgcggcggcagcggaaaagggatgcgcccggtaaagatagagccccccctggcccct
ttcctggagctggacgggaggctgcgcgccctgctgtcgcgctacctggaggcggatgtg
gagatcaggcaaaaggacccggtcttgaagctctcccattactggggggagttcgccgag
atcctggagttcgccacagcctcgaagcggcgggagtttttcacctcctatgagcctcat
tccggcggagggagcgtcaagataacctgctgcgacgcctccgccctcattgcggaccgg
tacggggagtaccagcaggtggtggcgttctcggcgaccctgaagccgttcgattactac
gcgaagctttccgggctcgacccggaacaggtgcgctgcgccgagttccagagccccttt
cccagcagcctgcgcaagctgatgatcatcccgcagatctcgaccagatactcccagcgc
gaacgcaattacggccggatcgccgatgccctggcccgggtagtggcgctgaaaagcgga
aactacctggcatttttcccgagtttcgttttccttgagcgggtggcggagctctttcgg
gcgccggaagggttcgaggtgctgctccaggagaggaagatgagcggggcgagggtgacc
gagatcctggagcggctgcgcgccgggaacgccccgacccttgtcttcgccgtgcaggga
ggctccctttccgaaggggtggattacgcgggggacatggtgataggcgccttcgtggta
ggtcccccccttcccaacttcgacctggagcgggaggagatgagggggtactaccagcgc
cattacggcaacggctaccagtacgcctacaccattccggccatggccaaggcgatccag
gcggcggggcgggtgatccgctcggaaacggaccgcggcctgatcgtcttgatggacgac
cgtttcctgcgagaggagtacagctcagccatgcctggggattggttcgagtccggggcc
agcgagctggtctcggaggccatattgagcgatatcagggagttttggggacggtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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