KEGG   Geosporobacter ferrireducens: Gferi_00690
Entry
Gferi_00690       CDS       T04493                                 
Name
(GenBank) polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
gfe  Geosporobacter ferrireducens
Pathway
gfe03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gfe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Gferi_00690
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gfe03019]
    Gferi_00690
   03016 Transfer RNA biogenesis [BR:gfe03016]
    Gferi_00690
Enzymes [BR:gfe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     Gferi_00690
Messenger RNA biogenesis [BR:gfe03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Gferi_00690
Transfer RNA biogenesis [BR:gfe03016]
 Prokaryotic type
  tRNA degradation factors
   Gferi_00690
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 SMC_ScpB GcvP2_C DUF4191 SPATA25
Other DBs
NCBI-ProteinID: AOT68229
UniProt: A0A1D8GBD4
Position
complement(135232..137337)
AA seq 701 aa
MEKTFKTILAGRPFEIQLGKIAQLASGSALVRYGDTVVLVTATSSAEPKQGIDFFPLSCD
YEERLYSVGKIPGGFIKREGRPTEKAILTSRLIDRPIRPLFPKGYRNDVQVIATVLSVDQ
DCTPDVVAMIGSSIALSISDIPFNGPTGSVIIGLIDGEFVVNPTAVEREKSEMHLVVSGT
KDAIMMVEAGSNEIGEDVMLEAILYAHEEIKKIVAFIEEIAQEVGKPKQEVKLFKIDETI
EKEVREFATDKMVQAIKTVDKMERNENMEAVKAETLAALLEKYPENQKDIDETLYQLIKE
QVRNMILDEEIRPDNRKPKEIRPISCEVSVLPRVHGTGLFTRGQTQALTVATLGAIGDAQ
ILDGLGEEESKRYMHHYNFPPYSVGEARFLRGPGRREIGHGALAERALEPVIPSEEEFPY
TIRLVSEIVSSNGSTSQAAVCGSTLALMDAGVPIKAPVAGIAMGLIKENEKVSILSDIQG
MEDFLGDMDFKVAGTEKGITAIQMDIKIDGINKEILERALAQAHEGRLYILEKMKEAIAE
PRAEMSPYAPRIIRTTIHPDKIRELIGPGGKTINKIIDETGVKIDIEDDGSVFITATDME
SGNKALKLIEGIVKEPQPGELYMGKVARITTFGAFVEILPGKEGLVHISHIAKERIAKVE
DVLAVGDEILVKVLEIDKQGRLNLSRKAALQDEEQEKKVEE
NT seq 2106 nt   +upstreamnt  +downstreamnt
atggaaaaaacttttaagactatattagctggaagaccctttgaaattcaattggggaaa
attgctcagctggcaagcggctctgctctagtcagatatggggatacagtagtgctagtt
actgctacttcatctgctgaacccaagcaaggcattgacttttttcctttgagctgtgac
tatgaagagcgactttactctgtaggaaaaatacccggcggatttataaaaagagaaggg
cgtccaacggaaaaagcaattttgacttcaagactgattgacagaccgatacgaccgctt
tttccgaagggatatcgtaatgatgtgcaagtaatcgccactgtactttctgttgatcaa
gattgtacacctgatgtggtagcaatgattggttcatctattgcattatccatctcagat
attccttttaatggtccaacaggctctgtgatcattggtctaattgatggagaatttgtg
gttaatcccacagctgttgagagagaaaaaagtgaaatgcaccttgtggtttccggaaca
aaggatgccattatgatggttgaggcaggttcaaatgaaataggcgaggatgtaatgctt
gaagcgattctgtatgcccatgaagaaataaaaaaaattgttgccttcattgaagagatt
gctcaagaagtaggaaaacccaagcaagaagttaaactatttaagattgatgaaaccatt
gaaaaggaagtaagagaatttgctaccgacaaaatggtacaggctatcaagacggttgat
aaaatggaacgaaatgagaatatggaagctgttaaagcagaaaccttagcggcattatta
gaaaaatatccggaaaatcaaaaagatattgatgaaaccttgtatcaactgatcaaggaa
caagtaagaaatatgattttagatgaggagatacggccagataacagaaaaccaaaagaa
atcagacccattagttgtgaagtatctgtattaccgcgggtacatggaaccggattattt
acaagaggccaaacgcaggcactaactgtggcaacccttggtgcaataggtgatgcacag
attttagacgggttaggagaagaagaatcaaaaagatatatgcatcattataatttccct
ccttatagtgttggagaggctagatttttaagaggacctggcagaagagaaatcggacat
ggtgctttggcagagagagcattagaaccagtaattccttctgaagaagagtttccttat
accatacgtcttgtttcggaaattgtaagctcaaatggaagtacttcccaggcagctgta
tgtggaagcacattggcgttgatggatgcaggtgttcctataaaagcaccggttgctggg
attgcaatgggtttaattaaagaaaatgaaaaagtgtcgattctaagtgatattcaggga
atggaagatttcctgggggacatggacttcaaagttgcagggactgaaaaaggaattact
gccatacagatggatattaagatcgatggaattaacaaagaaattctggaaagagcattg
gcacaagctcatgaaggtagattatacatactagaaaagatgaaagaagcaattgcggag
ccaagagcagagatgtctccttatgcgccaagaattataagaacgactattcatccggac
aaaattcgagagcttattggccctggtggaaagacaattaataaaattatcgatgaaacc
ggcgtaaaaatcgacattgaagatgatggaagtgtgtttattactgcaacggatatggag
agtggcaacaaagcacttaagctaattgagggaattgtgaaagaaccacagcctggagaa
ctatacatgggcaaggtagctcgaattacaacctttggagcctttgttgaaatactgccg
ggtaaagaaggtttagtacacatatcgcacatagcaaaagaacgaattgcaaaagtagag
gatgtgctggctgtcggtgatgaaattcttgttaaggtgttggaaattgataagcaaggc
aggctaaatttatcaagaaaagcagccctccaggatgaagaacaagagaaaaaagtggaa
gaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (39)   

Download RDF
DBGET integrated database retrieval system