KEGG   Geospiza fortis (medium ground-finch): 102031692
Entry
102031692         CDS       T03755                                 
Symbol
COL6A2
Name
(RefSeq) collagen type VI alpha 2 chain
  KO
K06238  collagen type VI alpha
Organism
gfr  Geospiza fortis (medium ground-finch)
Pathway
gfr04510  Focal adhesion
gfr04512  ECM-receptor interaction
gfr04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:gfr00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    102031692 (COL6A2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    102031692 (COL6A2)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    102031692 (COL6A2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:gfr04147]
    102031692 (COL6A2)
   00536 Glycosaminoglycan binding proteins [BR:gfr00536]
    102031692 (COL6A2)
Exosome [BR:gfr04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   102031692 (COL6A2)
Glycosaminoglycan binding proteins [BR:gfr00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   102031692 (COL6A2)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   102031692 (COL6A2)
SSDB
Motif
Pfam: VWA Collagen VWA_2
Other DBs
NCBI-GeneID: 102031692
NCBI-ProteinID: XP_005430688
UniProt: A0A6I9HVC0
Position
Un
AA seq 1020 aa
MFRQALFPTLLCVALVPLHAAQLDVDGGDVSPTSCAEKRNCPINVYFIIDTSESVALQTV
PIQSLVDQIKRFIPMFIDKLESELYQNQVYITWQFGGLHYSDVVEIYSPLTSSKDIYLPR
LSAINYLGRGTFTDCAISNMTQQIQTQMANGVNFAVVITDGHVTGSPCGGMKMQAERARD
MGIKLFAVAPSEKVYEQGLREIANLPHELYRNNYAITQRDTLEIDVNTIDRIIQAMKHEA
YGECYKMSCLEIAGPPGPKGYRGQKGAKGNMGEPGSPGLKGRQGDPGIEGPIGYPGPKGV
PGLKGEKGEIGSDGRRGAPGLAGRNGTDGQKGRLGRIGPPGCKGDPGDKGPDGYPGDAGD
QGERGDAGIKGDPGRPGRSGPLGPPGEKGSPGLPGNPGAQGPAGTKGRKGEVGPPGPKGE
AGRRGDPGTKGSKGTPGGIGERGDPGPEGNRGLPGEVGNKGARGEQGLPGPRGPSGAVGE
PGRIGSRGDPGDLGPRGDAGPPGPKGDRGRPGFSYPGPRGPQGDKGEKGQPGPKGGRGEL
GPKGVQGTKGEKGEPGDPGPGGEPGQRGPPGEAGPEGTPGPPGDPGLTDCDVMTYVRETC
GCCDCEKRCGALDIMFVIDSSESIGYTNFTLEKNFVINVVSRLGSIAKDPKSQTGARVGV
VQYSHEGTFEAIKLDDERIDSLSSFKEAVKRLEWIAGGTWTPSALQFAYNKLIKESRRKK
AQVFAVVITDGRYDPRDDDKNLGALCGRDVVVNTIGIGDMFDQPEQSETLVSIACNEPQR
VQKMRLFSDLVAEEFIDKMEDVLCPDPQVVCPELPCQTELAVAQCTQRPVDVVFLLDGSE
RIGEQNFQSAHRFVEDVARQLTLARSNSDHMNARIALLQYGSERDQNVVFPLTHNLTEIS
DALAQIKYLDSSSNIGSAIIHAINNIVLSPGNGQRLARRNAELSFVFITDGITGSKNLEE
AINSMKKQDVMPTVVALGRDVDMDVLLKLGLGDRAAIFREKDYDSLSQPSFFDRFIRWIC
NT seq 3063 nt   +upstreamnt  +downstreamnt
atgtttagacaagccttgtttcccactctcctttgtgtggctctagttcctctccatgcc
gctcagcttgatgtggatggtggagatgtcagtcctacctcctgtgcagaaaagaggaac
tgccccatcaatgtctacttcatcattgacacctcggagagcgtggctctgcagactgtg
cccatccagagcctcgtggaccaaataaagcgcttcatccccatgttcatcgataagctg
gagagcgagctctaccagaatcaagtctacatcacctggcagtttggtgggctccattac
tcagacgtggtagaaatttacagccccttgacaagcagcaaagacatttacctgcccagg
ctgtctgccattaattacctgggccggggcaccttcacggactgtgcaatctccaacatg
acccagcagatccagacccagatggccaacggcgtgaacttcgcggtggtcatcaccgat
ggccatgtaacgggcagcccctgtggggggatgaagatgcaggctgagagggcacgagac
atgggcatcaagctgttcgcggtggcccccagcgagaaggtgtacgagcagggtctgcgg
gagatcgccaacctgccgcacgaactctaccgcaacaactacgccatcacccagagggac
accctggagatcgatgtcaacaccatcgacaggatcatccaggctatgaaacacgaagcc
tacggcgagtgctacaagatgagctgcctggagattgcagggccacctggtcccaaggga
tacagagggcagaagggtgcaaaggggaacatgggtgagccaggttccccggggctgaag
ggacgacagggcgacccaggtattgaaggtccgatcggataccccggtcccaagggtgtc
ccagggctgaaaggagagaagggagaaattggatctgacggacggaggggtgcccctggc
ttggcaggaaggaatggcacagatggacagaagggcaggctggggagaattggaccacca
ggatgcaagggtgaccctggtgacaagggccctgatggctacccaggagatgcaggagac
caaggagaaagaggagatgcaggcataaagggggatcctggccggcctggtcgcagtgga
cccctggggcccccaggagaaaaaggaagcccgggacttccaggcaaccctggagctcaa
gggcctgctggaaccaagggaaggaaaggtgaagtgggacctcctggacccaaaggagag
gctgggcgacgtggagatccagggacgaaaggcagcaaaggcactcctggaggcatagga
gaaaggggagatcctggtccagagggtaatcgtggtctgcccggtgaggttggaaacaaa
ggagccaggggagaacaaggactaccaggacctcgaggcccttcaggtgctgtgggagag
ccaggcaggataggatcacgtggggaccctggtgacttgggcccaagaggtgatgctgga
ccaccaggaccaaagggtgacagaggcaggcctggctttagctaccccggacccagagga
cctcagggtgacaagggtgagaaggggcagccaggacccaagggaggacgaggcgagctt
ggaccaaaaggagtacaagggaccaaaggagagaagggggagccgggtgatcctggccca
ggaggagagcctggacagcgtggtccacctggtgaagcaggccctgaggggacccctggc
ccaccaggagatcctggtctgactgactgtgatgtgatgacctatgtgcgagagacgtgc
ggatgctgtgactgtgagaagcgctgcggtgccctggacatcatgttcgttatagacagc
tccgagagtatcggctacaccaacttcaccctggagaagaattttgtcatcaacgtggtc
agcaggctgggctctattgccaaggaccccaagtcacagacaggtgcccgtgttggggtg
gtgcagtacagtcacgaggggacttttgaagccatcaagcttgatgatgaacgcattgat
tctctgtcgagcttcaaggaagcagtgaagcgcctggagtggatcgctggaggcacctgg
acaccatctgcccttcagtttgcctacaacaagctcatcaaggaaagcaggagaaagaaa
gcccaagtgttcgctgtggtgatcacagacgggcgctacgacccccgggatgatgacaag
aacctcggggctctttgtggcagagatgtggtggtcaacaccatcggcataggcgacatg
ttcgaccagccggagcagagtgagaccctggtctctattgcctgcaacgaaccccagcga
gtccagaagatgaggctcttctcagacctagtggcagaggagttcattgacaagatggag
gatgtgctctgcccagatccacaggttgtctgccccgagctgccctgtcagacagagctt
gctgtagcccagtgcacccagcgccctgttgatgtcgtcttcttgctggacggctcagaa
aggatcggggagcagaacttccagagtgcccaccgcttcgtggaggatgtggcccggcag
ctgacgctggcccggagcaacagtgaccacatgaacgcccggatcgcgctgctgcaatac
ggcagtgagcgggaccagaacgtggtcttcccgctgacccacaacctcaccgagatctcc
gatgcgctggcacagatcaagtacttggactcgtcctccaacatcgggtcagccatcatc
cacgccatcaacaacatcgtgctcagcccaggcaacgggcagcgacttgcccggcgcaat
gccgagctctccttcgtcttcatcaccgacggcatcacgggaagcaagaacctggaggag
gccatcaactccatgaagaagcaagatgtcatgcccacggtggtggcactggggagggat
gtggacatggatgtcctgctgaagcttggccttggagacagggcagccatcttccgggag
aaagactatgacagcctctcccagcccagcttcttcgacaggttcattcggtggatttgt
taa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (29)   

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