KEGG   Geospiza fortis (medium ground-finch): 102042375
Entry
102042375         CDS       T03755                                 
Symbol
WRN
Name
(RefSeq) Werner syndrome RecQ like helicase
  KO
K10900  werner syndrome ATP-dependent helicase [EC:5.6.2.4]
Organism
gfr  Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:gfr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gfr03032]
    102042375 (WRN)
   03400 DNA repair and recombination proteins [BR:gfr03400]
    102042375 (WRN)
Enzymes [BR:gfr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     102042375 (WRN)
DNA replication proteins [BR:gfr03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    102042375 (WRN)
DNA repair and recombination proteins [BR:gfr03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecQ family DNA helicases
     102042375 (WRN)
SSDB
Motif
Pfam: DNA_pol_A_exo1 DEAD Helicase_C HTH_40 HRDC RecQ_Zn_bind RQC ResIII GIDA_C
Other DBs
NCBI-GeneID: 102042375
NCBI-ProteinID: XP_014165942
Position
Un
AA seq 1340 aa
MARTAVIQMCVAEDRCYLFHVSSMAGFPKGLKRLLEDETIKKVGVGIEGDQWKLMSDFEI
KLKSFVELADVANEKLKCKETWSLNGLVKHLFGRQLLKDPSVRCSNWEEFPLKEEQKLYA
ATDAYAGYIVYEKLKNMNKSDLKLFVGLVTDATSEDVKVRLASLAAEITDLASHIPDSSG
QLENLQRATEILAEISGNISALKTTLLGSGSPSGLERSCGANRTHLEAKSASVKAQKGEC
AEQPEGDLNICSDATLAVLWEEEMSGEEAQRGNTALENGAPAARVTDREDRDDFMSLDIT
EQELQVLERQAAKELGSEAAPEEACSTDNEQNVSCVIESDEELEMEMLKSLKDVDDCEGV
LPEGESSKARKTPEVDVAPDGDEDEGIEEEEEEYLDPLLPEPAESHIVCLKTYFGHSSFK
PVQWKVINSLLEDRRDNLVVMATGYGKSLCFQFPPVYTGRTGVVISPLISLMEDQVLQLT
MTGIPACFLGSAQSKQVKDSIRGGQYRVIYMTPEFCSENLELLQDLNRTVGITLIAVDEA
HCISEWGHDFRISFRSLGLLKKTLPWIPIIALTATASPSIREDIVKCLDLRNPQVTCTSF
DRPNLYLEVGQQSGDICRDLKQFLTRKGSSSVYEFEGPTIIYCPTRKATEQVVCALNKLN
VTCGTYHAGMGNKQRRDTHHQFMRDEIQCVVATVAFGMGINKADIRLVIHYGAPKEMESY
YQEMGRAGRDGLPAACHVLWAATDLAFNRRLLGEIRNEKFRLYKLKMLAKMEKYLVSNGC
RRKIILSHFEDRQLRKVSSGIMGTEECCDNCRSSGSCLAVPSDFEGGLQDFGKQAHQLLS
AVSALDEKFGTRMPILLLRGSCSQRLNWWKLLCQQLIMEGFLKEVSAQNNKFATNCVLTQ
KGRNWLSKDGSAPNPSLLLQSSEDLNLQRSSASSRRSPLLAKQRSPGTKGTAQSPGKQVS
LYEMFSCYRKGQTPPRNTNMVNSVSGRSPLKSPLKPQQPSASSREKELETALYGKLLTAR
QKVANEKEIPPAVLATNKILVEMARIRPTSIENLKKIDGVSEAKSTMLVPLLAEIKDFCQ
ANALQTDTFPTAESKVQKEASPWKRARALSPSEDVTYTLFQEKNYSLRAISESRSLPLAV
VGTHLCQALAAGRTVSVERAGLTPDVQSLIRDIICSPPILSDTTKIQEIRKRTPANIELY
LIKMMIVLLEKEDRNKSQDGLGFKRRLVWPEGQQGKTGADQARREGALWNKTQAAATVDG
SQAVSRGAAGPSKPTTAASSHEPALHPKQKEQLLADSQPKSSHPPAKRRVPEWFGTAAAT
PGAVTQTKKCKTETKKGIFS
NT seq 4023 nt   +upstreamnt  +downstreamnt
atggccagaacagctgtaatccagatgtgtgtggctgaggacaggtgctacttgttccac
gtctcctccatggcaggttttcccaagggactcaaaaggctgctcgaagatgaaacaatt
aaaaaggttggcgtaggaattgagggagatcaatggaagctgatgagtgactttgagatc
aaactgaagagctttgtggagctggctgacgttgctaatgagaaactgaagtgtaaggag
acgtggagcctgaatggcctggtgaagcacctttttggcaggcagctgctgaaggatccg
tccgtccgctgcagcaactgggaggagtttccactcaaggaggagcagaagctctatgca
gccacggatgcctatgctggctacattgtttatgaaaaactgaaaaacatgaataagagt
gacctgaaattatttgttggacttgttacagatgccacatctgaggatgtgaaggtgcgc
ttggcatccctggctgcagagataacagacctggcttctcacatccctgactcttctgga
caactggagaacttgcagagggctacagaaatactagcagagatatcagggaacatcagt
gccttgaaaaccaccctgctgggctcaggttccccttctgggctggagaggagctgtggt
gcaaacagaacacatttggaagccaagtcagcaagtgtcaaagcacaaaaaggagaatgt
gctgagcaacctgaaggtgacctcaacatctgctctgatgctaccctggctgtcctctgg
gaggaagaaatgagtggggaggaggcacagagaggtaacactgctctggaaaatggggct
ccagcagccagggtcacagacagagaggacagggatgacttcatgtccctggacattact
gagcaagagctgcaggtcttggaacgtcaggctgccaaggaattgggcagtgaagctgca
cccgaggaggcgtgttccacagacaatgaacaaaacgtgtcctgtgtcattgagagtgat
gaagagctggaaatggagatgctcaaatctctaaaagatgtagatgattgtgaaggagtt
ctacctgaaggagagtccagtaaagccaggaaaactcctgaagtggatgtagcaccagat
ggtgatgaagatgaaggcattgaggaagaggaggaggaatatttggatccactgctgcca
gagcctgcagaaagccacatcgtgtgtctcaagacctattttgggcattcttcttttaaa
ccggtccagtggaaagtgatcaattctcttttggaagacagaagagataatcttgttgtc
atggcaactggctatggaaaaagcttgtgcttccagtttcctcctgtttacactggacga
acaggagttgtcatctcccctcttatctccctgatggaggaccaggtgctgcagctgaca
atgacagggattccagcttgtttccttggttcagctcagtcaaaacaggtcaaggattcc
atcagagggggtcagtacagagtcatatacatgactccagagttttgctcagagaactta
gagttacttcaggaccttaaccgaactgttggtatcaccctcatagctgtggatgaagct
cactgcatctctgagtggggccatgacttcaggatctccttcagaagtttgggcttgtta
aagaagactctgccctggatccccattattgcattgactgcaactgcgagtccctcgatc
agagaggacatagtgaaatgcctggacctgaggaatccccaggtcacctgcacgagcttt
gacagacctaacctgtacctggaggttggacagcaaagtggagacatctgtagggatttg
aagcagttcctaactaggaaaggaagcagttctgtgtatgagtttgaaggccccactatc
atctactgccctacaagaaaggccactgagcaggtggtgtgtgcactgaataaactcaac
gtgacctgtggtacctaccatgctgggatggggaacaagcagaggagggatactcaccac
cagttcatgagggatgaaattcagtgcgttgtggccacagtggccttcgggatgggcatc
aacaaggccgacatccggctggtgatccactacggtgcccccaaggagatggagtcctac
taccaggagatgggcagggccgggcgtgacggcctccctgctgcctgccacgtcctctgg
gctgccactgacctggccttcaacaggcgcctcctgggcgagatccgcaacgagaaattc
cggctgtacaagctgaagatgttggccaagatggagaagtacctggtgtccaatggctgc
aggaggaaaatcatcctgtctcattttgaagacagacaactccggaaggtttcctctggc
atcatgggcacagaagaatgctgtgataattgcaggtccagtggctcctgccttgcagtc
cccagtgactttgagggtggattgcaggactttgggaagcaagcacaccagctgctgtct
gcagtgagtgccctggatgagaagtttgggaccagaatgccaattctgcttcttcgaggg
tcttgctcgcagcgcttgaactggtggaaactgctctgccagcagctgatcatggaaggc
ttcctcaaagaggtctcagcccagaacaacaagtttgcaaccaattgtgtgctcacccag
aagggtaggaattggctgtccaaggatggatctgccccaaatccaagtcttctgttacag
tccagtgaagacctgaatctgcagagatcttctgccagcagcaggcgttcgcctctgctc
gccaagcagcgctccccaggcacaaaaggaacagcacagtcaccaggcaagcaggtatct
ctatatgagatgttctcttgttacagaaaaggtcaaactcctccaagaaacactaacatg
gttaacagtgtttcagggcgctcaccattgaaatctcctttgaagccccaacaaccaagt
gcttcatccagagaaaaagagcttgagactgctctgtatggcaagctgctgactgctaga
cagaaggtagctaatgagaaggaaattcctccagctgtcttggcaaccaataagatcctg
gtggagatggcccggataaggcctacgagcatcgagaacctgaagaaaattgatggtgtg
tctgaagccaagtccaccatgttggtgcctctcctggctgagattaaggacttctgccaa
gcaaacgctttgcagaccgacacattccccaccgctgaatccaaggttcagaaagaagca
tctccctggaagcgtgctagagcgctttctccctcagaggacgtcacatacaccctgttc
caagagaaaaattactccctgagggccataagtgagagcagatctctgcccctggcagtg
gttggcacccacctgtgccaggcgctggccgcgggccgcacggtgagcgtggagcgcgcg
ggtctgacccccgacgtgcagagcctcatcagggacatcatctgcagccctcccatcctc
tcagacactaccaaaattcaagaaattagaaaacgtactcctgccaatattgagctgtat
ctgatcaagatgatgattgtactactggagaaagaggatagaaataaatctcaggatggc
ttaggcttcaaaagaaggttggtgtggcctgaagggcagcagggaaaaacaggagcagat
caagcaagaagagaaggtgcattgtggaataaaacacaggctgcagcgactgtggatggc
agccaggcagtgagtaggggggcagcaggcccctcaaagcccaccaccgcggcctcctcc
cacgagcctgccctccaccccaagcagaaggagcagctcttggcagactctcagcccaag
agctcgcatccccccgctaagaggagggtgccagaatggtttggaaccgccgcagcaaca
cctggagccgtaacccagaccaagaaatgcaaaacagaaaccaagaaagggattttcagt
tga

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (45)   

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