KEGG   Gallus gallus (chicken): 395530
Entry
395530            CDS       T01006                                 
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain precursor
  KO
K06237  collagen type IV alpha
Organism
gga  Gallus gallus (chicken)
Pathway
gga04510  Focal adhesion
gga04512  ECM-receptor interaction
gga04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:gga00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    395530 (COL4A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    395530 (COL4A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    395530 (COL4A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:gga04147]
    395530 (COL4A1)
   00536 Glycosaminoglycan binding proteins [BR:gga00536]
    395530 (COL4A1)
Exosome [BR:gga04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   395530 (COL4A1)
Glycosaminoglycan binding proteins [BR:gga00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   395530 (COL4A1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 395530
NCBI-ProteinID: NP_001155871
CGNC: 12637
Ensembl: ENSGALG00000036798
UniProt: A0A1D5P8P3
Position
1:complement(140137042..140249110)
AA seq 1669 aa
MWRWLGFGLLLSAELSAVSAAGCSGCGKCDCSGVKGQKGERGLPGLQGVIGFPGMQGPEG
PPGPPGLKGDTGEPGLPGTKGTRGPPGPSGFPGNPGLPGIPGQDGPPGPPGIPGCNGTKG
ERGPVGPPGLPGLTGSIGPPGPPGIKGDPGEVIGILPPSVLKGDKGFPGQPGLPGPPGTP
GFQGPMGPPGIPGEPGPPGPPGPPGEKGYMGLGFQGPKGEKGEQGVQGPPGPPGPAPHMK
EKGSEIIKGEKGEPGEKGEQGVPGLPGSGYRGEKGEPGKPGPRGKPGKDGEPGPKGEPGL
PGGFGIPGRPGEPGAKGEKGDQGPQGPPGRIIDAGPIDTFGEKGDPGVSGLPGLKGQKGE
KGFPGAQGIPGIPGRPVPDMVGSPGVPGQRGEKGEKGSPGFPIPGPPGRDGFPGPPGLPG
PPGPPGVTDGIDQCQQGQPGAPGVPGPPGQHGFPGEMGEKGEKGETCALCDKVGPPGLPG
PQGLPGPAGFPGQSGFKGDRGLPGLDGLPGVPGPPGAPGLIGLPGAKGEPGDFTYDSILK
GEKGDPGFPGQPGIPGREGTPGKDGLPGPQGPKGASGTAGLKGERGPPGQPGFPGVRGER
GLPGSPGVGTAGLPGDKGERGFAGTPGLPGLPGTKGEAGRTVPLPGPPGADGLPGPPGFP
GPQGDKGNPGLPGRPGLPGEKGAVGQPGIGFPGPPGPKGFPGQPGSPGPPGTPGTPGLDG
FPGTPGLQGQKGEPGVGLPGPKGLPGIPGPAGIPGEKGNPGLPGLRGEQGFPGVPGQQGF
RGDPGLPGLQGLPGPQGSPGVGPPGLPGPAGQPGPEGPPGFPGIKGERGFPGIPGLDMPG
PKGDKGSQGQPGVPGSVGLPGLPGPQGSVGLKGSAGAKGEMGVMGTPGLPGTPGPVGDRG
LPGEKGSQGLKGVVGPQGEPGVKGDKGEAGLPGIPGSMDTMDMVSLKGQKGDPGEKGDLG
PTGEKGLRGEYGEPGIPGRDGEPGTPGQPGPKGDQGPPGYPGDPGIPGQKGSVGEMGLPG
TPGEKGLPGIPGSPGTPGFPGQKGEKGDKGAAGFPGIGFPGSPGEKGEPGRTGSPGLSGD
KGEKGNAGIPGMPGAPGPKGSPGIAGFPGNPGLHGAKGEKGLPGLSGIPGLKGEPGEPGV
PGPAGSIGQKGEPGYDGIPGTAGAKGEQGVPGRGVPGYPGAKGDKGAKGEVGFPGSPGIP
GIPGLKGEQGYAGPPGPKGNQGLPGLPGSAIEGPKGDRGPQGQPGLPGLPGPTGPPGPPG
LKGAKGEQGSDGWPGTPGGPGDKGDPGFQGLPGSPGLPGGAGEKGDLGPPGVPGVPGPKG
SAGFPGLKGERGDQGLPGSKGLQGPPGPPGAFQLIKGDPGLPGPVGPVGLKGFPGHPGPK
GQQGVTGPSGVPGPPGSPGFDGRPGQKGEVGPYGPPGPRGIPGPPGPEGLPGAMGPPGAA
SVAHGFLVTRHSQTTEEPQCPFGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGESIRPFISRCSVCEAPAMVIAV
HSQTIQIPPCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERNEMFKKPTPSTLKAGDLRSNVSRCQVCMRNT
NT seq 5010 nt   +upstreamnt  +downstreamnt
atgtggcgttggctgggcttcgggctgctgctgagcgccgagctcagcgccgtgtccgcc
gcgggttgttctggttgtggaaaatgtgactgcagtggagtaaaaggacaaaagggagaa
agaggccttccgggactacagggtgtgattgggtttcctggaatgcaaggacctgaaggt
ccccctgggccaccaggacttaagggtgatactggagaaccagggctgccaggaacaaaa
ggaacaagaggcccaccaggaccatcaggatttccaggaaacccaggcctccctggcatt
cctggacaagatggccctcctggtccacctggcattccaggatgtaatggcacaaagggt
gaaagaggtccagtaggtcccccaggtttaccgggactgactggaagcataggaccccca
ggacctcctggaattaagggagatccaggtgaagtgattggtattttacctcctagtgtg
ctaaaaggtgataaaggctttcctggccaacctggactacctggtccacctggaactcca
gggtttcagggaccaatggggccaccagggattccaggagaaccaggtccccccgggcca
ccaggacccccaggcgagaagggctacatgggcttgggctttcaaggtcccaaaggtgaa
aagggagaacaaggggtccagggtcccccggggccaccaggaccagcaccacacatgaaa
gaaaaaggaagcgaaatcataaagggagaaaagggtgagccaggtgaaaagggtgaacag
ggagtcccaggattgccaggctcaggttacagaggagaaaagggtgaacctgggaagccc
ggtccacgtggaaagcctggaaaagatggtgaaccaggaccaaaaggagaacccggcttg
cctggagggtttgggattccaggaaggcctggggaacctggtgctaagggtgaaaaaggt
gatcaaggtcctcaagggcctccaggaagaattatagatgctggaccaatagatactttt
ggtgaaaaaggagaccctggagtttcaggtttgcctggactaaaaggtcaaaaaggtgaa
aaaggtttccctggtgcacaagggatcccaggaattccaggtcgaccagttccagacatg
gtaggatcacctggtgtccctggccagagaggtgaaaaaggtgaaaagggttctccagga
ttccctatacctggacctcctggaagagatggtttcccaggcccacccgggttgcccggc
ccaccaggtcctccaggtgtaacagatggaatagatcaatgtcagcaagggcaacctggt
gcaccaggtgtacctggacctccagggcaacatggatttccaggagagatgggagagaaa
ggtgaaaaaggtgaaacctgtgccttgtgtgataaagtaggaccccctggacttccagga
ccacaaggactaccgggtccagcaggttttccgggacagtcaggtttcaagggtgacaga
ggcttacctggacttgatggccttccaggcgtacccgggcccccaggcgctccaggactc
attggcctccctggggcaaaaggagaaccaggagactttacttatgattccatcctgaaa
ggtgagaagggagatcctggtttcccaggacaaccaggtattcctggaagagaaggaaca
ccaggaaaagacggattgccaggtcctcaaggtccaaaaggagcatcgggtacagctggc
ttgaaaggagaacgtggtccccctggacaacctggattccctggagtacgtggtgaaaga
ggtttacctggctctcctggggtaggcactgcagggttacctggtgacaaaggagagaga
ggttttgctggaactccaggtttaccaggtcttccaggaacaaaaggtgaagcaggacga
actgtaccactccctggacctcctggggcagatggccttcctggaccacctggtttccct
ggaccccaaggtgacaaagggaatcctgggcttccggggagacctggcctgccaggagaa
aaaggtgctgttgggcagccaggtatagggtttcctggacctccaggacccaaaggtttc
ccaggtcagcctggctcacctggtcctccgggtactcctggaacccctggcctggatggt
tttccaggcacaccaggtttacaaggtcaaaaaggtgaacctggagtgggtctccctggt
cctaaagggttaccaggcatcccaggtccagctggcatccctggagaaaaaggaaatcca
gggctgcctggcttacgaggtgaacaaggattcccaggtgtacctggacaacaaggattt
agaggagatccaggcctccctggactacagggcttgccaggcccccagggctcaccagga
gtgggcccaccgggattgccagggcccgctgggcagccaggacctgaggggccaccagga
tttcctggaataaaaggagaaaggggcttccctggtatcccaggtctagatatgccaggg
ccaaaaggagataaaggtagccagggccagcctggagtaccagggtctgtggggctacct
ggcctgccaggtccacaaggatctgttggactgaaaggatcagcaggagccaaaggagaa
atgggagttatgggaactccagggttgccagggactcctggaccagttggagatcgaggg
ttgcctggtgaaaaaggtagccaaggtttgaaaggtgtggttggaccacagggtgaacca
ggtgtcaaaggggataaaggtgaagctggtcttccgggaatacctggaagcatggacacc
atggacatggttagtctcaaaggccaaaagggagatcctggagaaaaaggggaccttggt
ccaacaggagaaaaagggttacgtggggagtatggagaaccaggaattccaggaagggat
ggtgaacctggtactccgggacaaccaggaccaaaaggagatcaaggccccccagggtac
ccaggagatccaggaattccagggcagaaaggatcagttggtgaaatgggtttgccagga
acacctggagaaaagggtctgcctggaataccaggttcaccaggcacaccagggttccct
gggcaaaaaggtgaaaaaggagacaaaggagcagcaggttttcctggaattggctttcca
ggatctcctggtgagaagggagaaccaggaagaacaggcagtccgggtttgtctggagac
aaaggtgaaaagggtaatgcaggaattccaggaatgccgggtgctccaggtcccaaagga
tcccctggcattgcaggatttccaggcaacccaggcctccatggagcaaagggtgaaaaa
ggacttcctggcttaagtggcatcccaggcttaaaaggagaaccaggtgaacctggtgtt
cctggtcctgctggttccattggtcagaagggtgaaccaggctatgatgggattccaggc
acagctggtgcaaagggtgaacaaggtgtaccaggtagaggagttccaggatatccaggt
gcaaagggagataaaggtgcaaagggtgaagtgggtttcccaggatccccaggaattcca
gggattccaggcttaaaaggagaacaagggtatgctggcccacccggccctaaaggcaac
caaggtcttcctggactaccaggaagtgcaattgagggccctaaaggagacagaggacca
caaggccaacccggccttccaggtttaccaggtccaacggggccaccaggacctccaggt
ctgaagggagctaaaggagagcagggaagcgatggctggcctggaactcctggaggtcca
ggagataaaggcgatccaggtttccagggactgccaggtagtcctggtttgccaggaggt
gctggtgaaaagggtgatctagggcctccaggtgttccaggtgttccaggtccaaaagga
tctgcaggcttcccaggcctcaagggtgagcgaggtgaccaaggtcttcctggatctaaa
ggtttacaaggcccgccgggccccccaggtgcttttcagcttatcaaaggagatcctggc
ttacctggcccggtaggaccagttggtctcaaaggattcccaggacatccaggtcccaaa
ggacagcaaggagtaacagggccttcaggtgtacctggaccacctggtagtccagggttt
gatggcagaccagggcaaaaaggagaagttggtccttatggtcctccagggcccagagga
atccctggtccgcctggccctgaaggtttgcctggggctatgggtccaccaggtgcagca
tctgttgctcatggcttccttgtcaccagacacagtcaaaccactgaagaaccacaatgt
ccatttggaacaaggctgatttaccatggctactcccttctttatgtacaaggaaatgaa
agagcacacggtcaagatctgggcactgcagggagctgtcttcgtaaatttagtactatg
cctttcttattttgcaatatcaacaatgtatgtaactttgcatcaaggaatgactattcc
tactggctgtccactcctgaacccatgccaatgagtatggcacctatcactggtgaaagt
atcagaccattcatcagcagatgctctgtgtgtgaagctcctgctatggtaatcgccgtt
cacagtcaaacaatccagataccaccatgtcctgaaggctggagttccctttggattggt
tactcctttgtcatgcacaccagtgctggtgctgagggctctggccaggccctggcgtct
cctggttcctgcctggaggagttccgcagcgctcccttcattgaatgccatggccggggc
acctgcaattattatgcaaatgcttacagcttctggcttgccactatagagaggaatgag
atgttcaagaaaccgactccgtcaactttgaaagcaggggatctgcgctccaacgttagc
cgttgtcaagtctgtatgagaaatacataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (67)   
   KEGG ORTHOLOGY (1)   
   RefGene (61)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   CGNC (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (16)   
   RefSeq(nuc) (4)   
   GenBank (6)   
   EMBL (6)   
Protein domain (2)   
   Pfam (2)   
All databases (97)   

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