KEGG   Gossypium hirsutum (upland cotton): 107933728
Entry
107933728         CDS       T04793                                 
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
  KO
K14326  regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03013  Nucleocytoplasmic transport
ghi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    107933728
   03015 mRNA surveillance pathway
    107933728
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107933728
Enzymes [BR:ghi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     107933728
    5.6.2.5  RNA 5'-3' helicase
     107933728
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     107933728
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     107933728
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase DEAD UvrD-helicase Helicase_RecD nSTAND3 ATPase PhoH AAA_16 SRP54 AAA_22 AAA_32 Ribosomal_S13_N AAA_25 AAA
Other DBs
NCBI-GeneID: 107933728
NCBI-ProteinID: XP_016721495
UniProt: A0A1U8M3W7
Position
A03:922645..932464
AA seq 1262 aa
MDSQFDTASQPDPATDAYTFLEFNTQGESDFEYADFRDPIRSWPTPSDATVADRSASDHH
SDTPASSSPSSVPKGAGRGATSNNNNSNSNSVSNSVAVVDSLATGISGLNFEETVGEEDG
GYEYGKGDFAEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKE
VCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNWDLS
QWCPLIDDRCFLQWLVKIPSEKEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGVDD
EPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRIAYFVF
PKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHG
FSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGL
PELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVD
QLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVQHLDTSEKSELHKLQQLKDEQGE
LSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPEC
LIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLILLGVKPIRLQVQYRMHP
CLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLN
RTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASV
DSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQALWN
GLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVPSDNFGSAASPS
PNADRRGSRARGAYMPPGPPNGTHKPGVHPSGFPMPRVPLPPFPGPQPYAIPARGAVHGP
VGAVPQVPQPGTRGFGAGRGNGGAPIGSHLPQQQGTQQNIGTIGSSFNFPLENPNSQPSV
GGPLSQPGFVNNVQGPSQAFRDGFSMGGMSQDFLGEDFKSQGSHVPYNIADFSTQASQSG
YAVDYLTQGAQSGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMNHGSQGLFTQAGFNDPSH
DDASQSHFGVSNPNQLQSQGLMNSLYSQPFSHYNTQPLNLPAPQQQPQQDQGSQNQKFHY
NG
NT seq 3789 nt   +upstreamnt  +downstreamnt
atggattctcaattcgatacggcgtcgcaacctgaccctgccaccgatgcttataccttc
ctcgaattcaacacccaaggcgagtccgatttcgagtacgccgacttccgtgatccgatt
cgttcttggccgacgccttctgacgctactgtcgctgatcgttcagcctccgaccaccat
tccgacactcccgcgtcctcttctccttctagcgttccgaaaggcgctggccgtggcgcg
acgagcaataataataacagcaatagcaatagtgttagcaatagtgtggccgtggttgat
tcgttagcgacggggattagtggattgaattttgaggagacggttggggaagaggatggc
ggttatgagtatgggaaaggggatttcgcggaacacgcttgtcgatattgtggggtttct
aatccggcttgtgtggttcgttgtaatgttccttcatgtaggaaatggttttgtaattca
agagggaatacgtcgggatcgcatattgttaatcatcttgtacgagctaaacacaaggaa
gtttgcctccataaggatagtcctttgggagaaacaattcttgaatgctacaactgtgga
tgcagaaatgtcttccttcttggttttatatctgctaagacagagagtgttgttgttctt
ctttgtagagaaccttgtttgaatgtaaatgctttgaaagacatgaattgggacttgagt
cagtggtgcccccttattgatgataggtgctttctccagtggctggttaagatcccatct
gaaaaagaacagctacgggcgcggcaaataagtgctcaacaaataaacaaggtagaagag
ctttggaagacaaatcctgatgcctcccttgaagatcttgagaagcctggtgttgatgat
gaaccacagcctgtggccttgaagtatgaagatgcttatcagtatcaaaatgtttttgct
ccacttatcaagcttgaagctgattatgacaaaatgatgaaagaatctcaaagcaaggat
aatgttacagttcgatgggatattgggttaaacaagaagcgtattgcatattttgtcttt
ccaaaggaagacaatgagctgcgtctagtacctggtgatgagttgcgtctgcgttattca
ggagatgctgctcatcctgcatggcagtctgttgggcatgtgatcaagctaacggcacaa
gaagaggttgcgcttgagctccgtgctagtcagggagttcctgttgatgtgaaccatggg
ttcagtgttgattttgtgtggaagagtacaagttttgaccgaatgcaaggggcaatgaaa
acatttgcagttgatgaaactagtgttagtggatatatttaccatcacctgcttggtcac
gaggttgaggtgcagatggttcgcaatgcactgcctcgtcgttttggtgcccctggtctg
cctgaattgaatgcatcccaagtttttgctgtgaagagtgttcttcagaagcctataagc
ttgattcaaggtccccctggaactggaaaaactgttacttctgctgccattgtatatcac
atggctaaacagggtcaggggcaggttctggtctgcgctccaagtaatgttgctgttgat
cagctagctgaaaagataagtgccactgggttaaaggttgtaagactttgtgcaaaatca
agagaagctgtaagttctcctgttgaacatttgaccctgcattatcaggttcaacatctt
gacacatctgagaagagtgaacttcacaagttacaacaattgaaagatgaacaaggtgag
ttgtcaagcagtgatgagaaaaaatataaagcactgaagcgagcaactgagagggaaata
tctcaaagtgctgatgtcatttgttgcacttgtgttggggctggagatcctagattggct
aattttaggttccgccaggtacttattgatgaatctactcaggcgacggaacctgagtgt
ctcattcctttagttcttggtgcgaagcaggttgttcttgttggtgatcattgccaactt
ggtcctgttattatgtgcaagaaagctgcccgtgctggattagcacagtctttgtttgaa
cgtctaattttacttggtgttaagccaattagattgcaggttcaatatcgtatgcaccca
tgtttgtcagagtttccttctaacagcttctatgagggcaccttacaaaatggagtgaca
atcaatgaaaggcaatcttcgggcattgatttcccttggcctgtgcccaatcgtcccatg
tttttttatgtacagatggggcaagaggagattagtgctagtggaacatcatatctaaat
agaactgaggctgcaaatgttgaaaagattgttaccacattcttgaggagtggggttgtt
cctagtcagattggggtcataacaccttatgagggacaaagggcgtatattgtgaattat
atgtcaagaaatggtgctttgagacagcagctttacaaggaaatcgaggttgcaagtgtc
gattctttccaaggacgggaaaaagattacatcatcttgtcttgtgtgagaagtaatgag
catcagggtatcggatttctaaatgatcctcgcaggcttaatgttgccctaacacgtgct
cgatatggtatagtaattcttggaaatcctaaagttcttagcaaacaagctttgtggaac
ggtttattgacacattacaaggaacatgagtgcctggttgaaggacccctcaataacttg
aagcagagtatggttcaattccaaaagcccaaaaagatttacaatgaccggagacttttc
tttggaggtggacctgggattgtgcctagtgataattttgggtctgctgcctcaccgagt
ccaaatgctgatagaagaggcagtcgtgctcggggtgcttatatgcctcctggtccacct
aatggtactcacaagcctggagtgcacccttctgggttcccaatgcctcgggttccactt
ccaccttttcctggtcctcagccttacgctattcctgctcgtggagctgtacatggacca
gtgggagctgttcctcaggtacctcaacctggaactcgaggctttggggctgggcgtggt
aatggtggtgctcctatcggtagtcatcttccacagcagcaaggcacacagcaaaacatt
ggaactattggatcttctttcaacttccctctggagaatccaaatagccagccatccgtg
ggtggtccattatctcaacctggatttgttaacaatgtccaagggccgagtcaagctttc
cgtgatggattttcaatgggaggaatgtcccaggacttcttgggtgaagacttcaaaagc
caaggctcacatgtcccttataacattgctgatttttctacacaggcttctcagagtgga
tatgctgttgattaccttacacaaggagcacagagcgggtttccagggaacttcctaaac
cagaattctcaagctggatattctcgttttggttctggaaatgatttcatgtctcaggac
tacatgaatcatggatcacaaggcctgtttactcaggctggctttaatgacccttctcat
gatgatgcatctcaaagccactttggcgtgtctaatccaaaccagcttcagtcccagggc
ttgatgaattctctctactcccagcccttttcccactacaacacacagccactgaacttg
cctgctcctcaacagcagcctcagcaggaccagggctcccaaaaccagaaatttcactat
aacggttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (21)   
   Pfam (21)   
All databases (38)   

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