KEGG   Gossypium hirsutum (upland cotton): 107951232
Entry
107951232         CDS       T04793                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14 isoform X1
  KO
K18663  activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
Organism
ghi  Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107951232
Enzymes [BR:ghi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     107951232
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   Direct repair
    107951232
SSDB
Motif
Pfam: Sec63 DEAD ResIII Helicase_C AAA_22 T2SSE IstB_IS21 DUF4600
Other DBs
NCBI-GeneID: 107951232
NCBI-ProteinID: XP_016741681
UniProt: A0A1U8NRR5
Position
A12:complement(98857276..98885950)
AA seq 2089 aa
MLVQLPRLTNSLREPFDIDQAYLQRKIILETQKKSINSGNSLDESELARKIVHRWEEAAS
VEVRQVYKQFIGAVVELIDGDVPSEEFREVVLTAYRLFSGSVEVDEVDKNINEKTVELQK
VIGHGVSHANVRKVSSLAQKLSQSQPRDSGAILGSEKHVNGSGDDSEFGADLAFKAPARF
LVDVSLEDVELLGDESIAPSSSFIEGWHDKNGPINYHGNTDSRNFNLSWLRDSCELIVRG
STSQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQDLLSHRKELVEAIHHG
LSVLKSEKLTSSSQSRMPSYGTQVTVQTESEKQIDKLRRKEEKRNRRATEYGAENDMSAA
SFSSLLQASEKRSPFEDLSGSGQGSNSVAVTALPQGTVRKHFKGYEEVIIPPTPTAQMKP
GEKLIEIKELDDFAQAAFRGYKSLNRIQSRIFQTVYHTNENILVCAPTGAGKTNIAMISI
LHEIGQHFKDGYLHKDEFKIVYVAPMKALAAEVTSTFSQRLSPLNMCVRELTGDMQLSKN
ELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQ
VESTQSMIRIVGLSATLPNYLEVAQFLRVNAETGLFFFDSSYRPVPLAQQYIGISEQNFV
ARNELLNEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAEKLVELARKYEGLELFKNDAHP
QFSLIKKEVVKSRNKDLVQLFDFGVGVHHAGMLRSDRGLTERLFSDGILRVLVCTATLAW
GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLA
YYLRLLTSQLPVESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRLNPLAYG
IGWDEVVADPSLSLKQRALVTDAARALDKAKMMRFYEKSFYCTELGRIASHFYIQYSSVE
TYNEMLRRHMSDSEVIEMVAHSSEFENIVVREEEQNELEMLARTSCPLEVRGGPSNKHGK
ISILIQLYISRGSIDSFSLVSDAAYISASLARIMRALFEICLRRGWCEMTLFMLEYCKAV
DRQIWPHQHPLRQFDKDLSLEILRKLEERGADLDRLQEMEEKDIGALIRYAPGGRLVKQY
LGYFPWVQLSATVSPITRTVLKVDLLISSDFIWKDRFHGAAQRWWILVEDTENDHIYHSE
LFTLTKKMARAESQKLSFTVPIFEPHPPQYYIRAVSDSWLYAEAFYTISFQNLRLPEACT
TLTELLDLKPLPVTSLGNSTYESLYSFSHFNPIQTQIFHVLYHTDNNVLLGAPTGSGKTI
SAELAMLHLFNTQPDMKVIYIAPLKAIVRERMHDWRKRLVSQLGKEMVEMTGDYTPDLMA
LLSADIIISTPEKWDGISRNWHSRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRYIS
SQTERAVRFVGLSTALANAGDLADWLGVGEIGLFNFKQSVRPVPLEVHIQGYPGKYYCPR
MNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQYAASDENPRQFLSMPEEALQ
MVLSQVTDQNLRHTLQFGIGLHHAGLNDKDRSLVEELFSNNMIQVLVCTSTLAWGVNLPA
HLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQDGKAVILVHEPKKSFYKKFL
YEPFPVESSLREQLHDHMNAEIVSGTICHKEDAVHYLTWTYLFRRLMVNPAYYGLESGED
ETLSSYLSSLVQSTFEDLEDSGCIKMTEDSVEPMMLGTIASQYYLSYMTVSMFGSNIGPD
TSPEVFLHILSGASEYDELPVRHNEENYNEALSKRVRYMVDQNRLDDPHVKANLLFQAHF
SQLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLTSSIACMHLLQMVMQGLWFGQD
SALWMLPCMNNELAGSLCKRGISTVQQLLDLPKATLQTVIGNFPASKLYQDLQHFPCIRV
KLKLLKKGTESKKSLQLNVRLEKTNLRRNMSRAFAPRFPKIKDEAWWLILGNTSTAELYA
LKRVSFSDRLVTHMELPSDVTLIQGMKLIIVSDCYIGYEQEHSIENLAA
NT seq 6270 nt   +upstreamnt  +downstreamnt
atgttggttcagcttcctcggttgacaaattctttaagggaaccgttcgatatcgaccaa
gcttatctccagcgcaagatcatccttgaaacccagaaaaaatctatcaattcgggaaac
tcccttgatgagtcagagcttgcaaggaagatagttcatcgatgggaagaagcagcttct
gtagaagtgagacaagtatacaaacagttcattggggcagtggtggagctgattgatgga
gatgtaccttctgaagagttccgtgaggttgtgttgactgcttatcgtctttttagtggg
tcagtggaagtggatgaagttgataaaaacataaatgagaagacggtagaattgcagaaa
gttattggtcatggagtttcacatgctaatgtgcggaaggtgtcctctttggcacagaag
ctatctcagtctcaaccaagagacagtggggccatacttggttctgaaaagcatgtaaat
ggaagtggagatgattcagaatttggtgctgaccttgcctttaaagcaccagcccggttt
ttggtggatgtttctttggaggatgtggaattactgggtgatgaaagcattgcaccttct
tcttcatttattgaaggatggcatgataaaaatggccctataaattatcatggcaatact
gatagtagaaacttcaatttaagttggttaagagattcatgtgaactaattgttagaggg
agtacttcacaactttcccgagatgacctggctatggcaatctgtcgggtacttgattca
gacaaacctggtgaagagatagctggcgatttattggaccttgtcggggatagcgcattt
gaaactgttcaagaccttttatcgcatcgaaaggagcttgttgaagctattcatcatgga
ttatctgtattgaaatctgaaaaattgacttcaagttctcagtcacgcatgcccagctac
gggacccaggtgactgtccaaacagagtctgagaagcagattgataaactgcggcgcaag
gaggaaaagcgtaacagacgtgcaacggaatatggggctgagaatgatatgtcagctgca
agcttttcttctttacttcaagcgagtgagaagagaagtccgtttgaagatttgagtgga
tctggtcaagggtctaattctgtggcagtaactgcccttccacaggggactgtacggaag
cattttaaggggtatgaggaggtgattatacccccaacaccaactgctcaaatgaaacct
ggagaaaagctgattgagataaaggagttggatgacttcgctcaagctgcttttcggggt
tacaaatctctgaatcgtattcagagtcggatattccaaaccgtatatcacactaatgag
aatatattagtttgtgcaccaactggagcaggcaagacaaacatagccatgatatctatc
ctacatgagattgggcagcatttcaaggatggctacttgcataaagatgaatttaagatc
gtttatgttgctcctatgaaggcattagctgctgaggtcacatcaacatttagtcaacgc
ttatctccattgaatatgtgtgtgagagaacttactggagacatgcaactttctaagaat
gaacttgaagaaactcagatgatagttacaacacctgagaaatgggatgttattactcgc
aaaagtagtgatatgtcactctcaatgctggtgaagctcttgattattgatgaagtgcat
cttctaaatgatgatagaggtccagtaatagaagctctagtggctagaactcttcgtcag
gtggagtcgacacagtcaatgatacgaattgttggcctttcagctactctacctaattac
ttagaggttgcacagttccttagagtgaatgcagagactggcctttttttctttgattct
agttatcgtccagttccgcttgctcaacaatatattggaattagtgagcagaactttgtt
gcccgtaatgaattattgaatgagatatgctataagaaggtggttgattccttaaggcaa
ggtcaccaggcgatggtgtttgttcattcaaggaaggatactgtcaaaacagctgagaag
ctggttgagcttgctcgaaagtatgagggtcttgagcttttcaagaatgatgcccatccc
cagttctccttaatcaagaaggaagttgttaagtcaagaaacaaagatctagttcagctt
tttgatttcggagttggtgtgcatcatgctggtatgttacgttctgatagggggcttact
gagaggcttttctctgatggaatcttgagggtacttgtttgcacagctaccttggcctgg
ggtgttaatttgcctgctcacacggttgtcatcaaggggactcaattatatgatccaaag
gctggtgggtggcgagacctgggcatgctagatgttatgcagatatttggaagggcaggt
cgacctcagtttgacaaaagtggtgagggcatcataattacatctcatgacaaactagcc
tactatctgcgattgttgacaagccaacttcctgtagaaagtcagtttatcagctcgttg
aaagataatttaaatgcagaggtagcattgggtactgtaactaatgtcaaggaggcttgc
gcatggcttgggtacacctatctatttatcaggatgaggttgaacccactggcatatggc
atcggatgggatgaggttgttgcagatccttctttgagtttaaagcaaagagctctagta
acagatgctgcacgtgcactagacaaagctaaaatgatgcgtttttatgagaaaagtttc
tattgtacagagcttggtcgtattgcaagtcacttctatatccaatattctagtgttgaa
acttacaatgaaatgctcaggcgccatatgagtgacagtgaggtaattgaaatggttgcc
cattcttctgaatttgaaaacattgttgttcgagaagaggagcagaatgagctagagatg
ctggcgcgcacatcatgcccattagaagttaggggggggccttcaaacaagcatgggaaa
atttcaattctcattcagctgtacatatcacgtggctccattgattccttttcgttggta
tctgatgctgcatatataagtgctagtttggctcgcatcatgcgtgctttgtttgaaata
tgcttgcgcagaggctggtgtgagatgacattattcatgttggaatattgcaaggccgtg
gatcgccaaatttggcctcatcaacatccgctcagacaatttgataaagatctttcacta
gaaatattaaggaagcttgaagaacgaggggctgacttagatcgtcttcaggagatggaa
gaaaaagacattggtgcactgattcgttatgcacctggaggaaggttggttaagcaatat
ttaggatatttcccttgggtccagttatcagcgactgtgagtccaataactaggactgtt
ttaaaggtagatttgcttatatcttctgattttatttggaaagatcgatttcacggtgct
gcacaacgttggtggatacttgttgaggacactgagaatgatcacatctaccactctgag
ctttttacactgacaaagaagatggctagagcagaatctcagaagctttcctttaccgta
ccaatatttgaaccacatcctcctcagtactacattcgtgctgtttctgattcttggttg
tatgctgaggctttctacactatatcattccaaaatctaagactgccagaggcttgtacc
actcttacagagcttcttgatttgaagcctctgcctgtaacttcactcggcaacagcact
tatgaatcattgtatagcttttcacattttaatccgatacaaacgcagatctttcatgtc
ctgtatcacacagataacaatgttctattaggagctcctacgggtagcgggaaaactata
tcggctgaacttgctatgctgcacctcttcaatacccaacctgatatgaaggttatctac
atagcacctttgaaggccattgtacgggaaaggatgcatgattggaggaagcgtcttgtc
tctcagcttgggaaagaaatggttgaaatgactggagattatactccagatttgatggcc
ctgttgtctgctgatattatcatatctactcctgaaaagtgggatggtattagtcggaat
tggcatagtcgaagctatgtcacaaaggttggacttatgatattggatgagattcactta
ctgggagctgatcgtggacccatcctggaggttattgtttcaaggatgagatacatatca
tcacaaacagagcgtgcagtacggtttgttgggctctccacggctttggcaaatgcaggt
gatttggctgattggttgggtgttggtgaaattgggctcttcaactttaaacaaagtgtg
agacctgtacctcttgaagttcatatccagggatatcctggaaagtactactgcccaaga
atgaatagtatgaataaaccagcatatgctgcaatatgcacccattcaccgacgaaacca
gttcttatttttgtttcgtctcggcgtcagacaaggctgactgctttggaccttattcag
tatgcagcatcagatgaaaatccaaggcaatttttgagtatgccagaagaagctttgcag
atggtactttcccaggttactgatcaaaacctgaggcataccttacagtttggcattgga
ttgcatcatgctggactaaatgacaaagatagatctcttgttgaggagcttttttccaac
aacatgatccaggttttggtttgtacaagcacattagcttggggtgtaaatcttccagcc
catttggttattatcaagggaacagagtattatgatgggaaaacaaagaggtatgttgat
ttccccattacagatattttgcaaatgatgggtcgagccggtcgtcctcaatatgatcag
gatgggaaggcagttattcttgttcatgaacccaaaaagagcttttacaaaaagttccta
tatgaaccatttccagttgagagtagcctgagggagcagttgcatgatcacatgaatgca
gagattgtttctggaacaatatgtcataaagaagatgctgttcattatcttacttggacc
tacttgttccggagactgatggttaatcctgcatactatggcttggagagtggagaagat
gaaacattgagttcgtatttgtccagcttggtgcaaagcacctttgaggatctagaagat
agtgggtgcatcaaaatgactgaagacagtgtagagcctatgatgttgggaacaatagca
tctcagtattaccttagttacatgactgtatcaatgtttgggtcaaacattggaccagac
acgtctcctgaagtgttcttgcatattttgtcgggtgcttctgagtatgatgaacttcct
gtgcgacataatgaggaaaactataatgaagcattgtctaagagagtccggtatatggtg
gatcaaaatcggcttgatgatccacatgtcaaagcaaaccttctattccaggcacatttt
tcccagttagatttaccaatcagcgactatgtgactgacttaaagtcagtgttggaccaa
agcatacgcatcattcaagctatgatagatatatgtgccaatagtggatggcttacaagt
tcgattgcttgcatgcatctattgcagatggtcatgcagggtttgtggtttggtcaggat
tcagccctctggatgttgccgtgtatgaataatgaacttgctggctcattgtgcaagaga
ggaatttccaccgtacagcaactattagatcttcctaaggcaacattgcaaactgtgatc
ggaaacttccctgcttcaaaattatatcaggatctgcagcatttcccctgtatacgagtc
aaattaaaactgctgaagaagggcactgagagcaaaaagtctcttcaactgaacgtcaga
ttggagaagacaaatttgaggcggaatatgtcaagggcatttgcccctcgtttccctaag
attaaagatgaagcatggtggctgattcttggtaacaccagtactgctgaactatatgct
ctgaagagagtttctttctccgatcgcttagttacccacatggagttaccatcagatgtg
accttgattcaggggatgaaactaattatagtttcagattgctatattggttatgagcaa
gaacactccattgaaaatcttgctgcataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (8)   
   Pfam (8)   
All databases (24)   

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