KEGG T04793: 107952992

Gossypium hirsutum (upland cotton): 107952992

Entry

107952992         CDS       T04793

Name

(RefSeq) LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 1

K11592

endoribonuclease Dicer [EC:3.1.26.-]

Organism

ghi Gossypium hirsutum (upland cotton)

Brite

KEGG Orthology (KO) [BR:ghi00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ghi03036]
    107952992
Chromosome and associated proteins [BR:ghi03036]
Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    107952992
   microRNA pathway
    RISC loading complex
     107952992

SSDB

Motif

Pfam:

Ribonuclease_3 Ribonucleas_3_3 Dicer_dimer dsrm Helicase_C DND1_DSRM PAZ DEAD ResIII Dicer_dsRBD Dicer_PBD SWI2_SNF2

Other DBs

NCBI-GeneID:

107952992

NCBI-ProteinID:

XP_040973845

Position

A07:29088516..29098641

AA seq 1951 aa
MEEEGRVSGGNGSSYWLDACEDISCDLISDFVDFDAPIVQDSVDNTSNQDFFGGIDHILD
SFKNGGGLPPVGSNGDSSAVNGNGIYDPVAGDGWSPNELSGVSKDLPDNSVPPSNGVEKK
IGSKGQEKSCDDSNSSLFDYSNKDNGVHRDDKRSSESRDRGLDSEERCRKRARANGCKSD
RQYSSRGQYYPRDRERCSSRKRVRDWDEIDRRDREHVRRREHYYGGNRRDGREREPRGYW
ERDRSGSNEMVFRLGTWEADRQREGKVAYDKTPECNGKMEKKVEQPKEKLLEEQARQYQL
DVLEQAKRKNTIAFLETGAGKTLIAVLLMKSISDDLQKHTRKMLSVFLVPKVPLVYQQAE
VIRERTGFQVGHYCGEMGQDFWDARRWQREFESKQVLVMTAQILLNILRHSIIKMESINL
LILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNL
ESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQIKQMEATVEEAAQSSSR
RSKWQFMGARDAGAKEELHQVYGVSERTESDGAANLIQKLRAVNYALGELGQWCAYKVAQ
SFLTALQNDERANYQLDVKFQESYLNKVVSLLQCQLSEGAVTEKDMNNAEAENCNAQDGT
NTDEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIF
VERVVAALVLPKVFAELPSLSFIRCASLIGHNNSQEMRTGQMQDTIAKFRDGRVTLLVAT
SVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHATFLRNAR
NSEETLRKEAIERTDLSHLKDTSRLISVDMVPGTVYQVESTGAIVSLNSAVGLVHFYCSQ
LPSDRYSILRPEFIMKKHEKPGGPTEYSCKLQLPCNAPFEELEGPMCSSMRLAQQAVCLA
ACKKLHEMGAFTDMLLPDKGSGEEAEKVDQNDEGDPLPGTARHREFYPEGVADILQGEWI
LSGRDCVGDSKIHRLYMYTIKCVNNGSSKDPFLTKVSDFAVLFGKELDAEVLSMSVDLFI
VRAMITKASLVFRGSIDITESQMASLKNFHVRLMSIVLDVDVDPATTPWDPAKAYLFVPV
VGDKFVDPIKEVDWDLVDNIITTNAWSNPXQRARPDVFLGTNERTLGGDRREYGFGKLRH
GLAFGHKPHPTYGIRGAVAPFDVVKATGVVPSRDTIEVQGDWTKGNLIMADGVARAEDLV
GRIITAAHSGKRFYVDTICYDMSAETSFPRKEGYLGPVEYSSYADYYKLKYGVELSYKQQ
ALIRGRGVSYCKNLLSPRFEHSEGESEEALDKTYYVFLPPELCFVHPLPGSLVRGAQRLP
SIMRRVESMLLAIQLKHIIQFPVPASKILEALTAASCQETFCYERAELLGDAYLKWVVSR
FLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALNKGLQSYIQADRFAPSRWAAPGVLPVFD
EDTKDGDMSLFDQEHATADVLPVKVLGDGFEDEDMEDGEIESDSSSYRVLSSKTLADVVE
ALIGVYYVEGGKHAANHLMKWIGIQVESDPDDMDSIVKPSNVPESILRSVNFEALEGALN
IEFKNRALLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPGRLTDL
RAAAVNNENFARVAVKHQLHVHLRHGSSALEKQIRDFVKEVQDELLKPGFNSFGLGDCKA
PKVLGDIVESIAGAIFLDSGRDTAVVWRVFQPLLHPMVTPETLPMHPVRELQERCQQQAE
GLEYKASRSGNLATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKETAEAKENCE
ENGKKKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVKVNTTDRGWT
DECIGEPMPSVKKAKDSAAVLLLELLNKWYS

NT seq 5856 nt +upstreamnt +downstreamnt
atggaggaagaaggtagggtttctggtggcaatgggtcatcttactggctggatgcttgt
gaggacatatcatgcgacttgattagcgattttgttgatttcgatgctcctatagttcaa
gactccgttgacaatacttccaatcaagatttctttggaggaattgatcacattctcgat
agcttcaagaacggcgggggacttcctccggtgggaagtaacggtgatagctctgccgtc
aatggaaatggaatttacgaccccgttgctggagatggatggtctcccaatgagctctct
ggggtctccaaggatttacctgacaactcagttccgccatctaatggagttgaaaagaag
attggaagcaaagggcaggaaaaaagctgcgatgatagtaattccagtttatttgattat
tctaataaggataatggagttcatcgagacgataaaaggtcatccgagtcgagagatagg
ggtttagatagtgaagagaggtgtagaaagagggctcgtgcgaatggctgcaagagtgat
aggcagtattctagtagaggtcaatattatccccgggatagggagagatgttcttctagg
aaaagggttcgagattgggatgaaattgatcggagagatagagagcatgttaggagaaga
gaacattattatggtggcaataggagggatgggagagagagagaaccaaggggttattgg
gagagggatcggtcagggtccaatgagatggtttttaggttgggtacttgggaagcagat
cggcaaagagaagggaaggtggcttatgacaaaactcccgagtgcaatggaaagatggag
aagaaagttgagcagccgaaggaaaaactcttggaggagcaagctcgtcaatatcaattg
gatgttcttgagcaggcaaagaggaaaaacacaattgcatttcttgaaaccggggcaggg
aagaccctcattgctgttctcctcatgaaaagtatttctgatgatttacaaaagcacacc
agaaaaatgctctctgtctttttggttcctaaagttccactagtttatcagcaagctgaa
gttattcgcgagagaactggtttccaagtaggtcattattgtggggagatgggtcaagat
ttttgggatgctcgtaggtggcagcgcgagtttgaatcaaagcaggttttggttatgaca
gctcaaattctgctgaatattttgagacacagcataattaaaatggaatcaatcaatctc
cttatcctggacgagtgtcatcatgctgtgaagaaacatccgtattcactggttatgtct
gaattctatcatacaacaccaaaggagaagagaccttctgtttttggaatgaccgcttct
cctgttaacttgaagggtgtttcaagtcaagttgattgtgctataaaaattcgtaatcta
gaaagcaaactggattctgtagtctgtaccatcaaagaccgcaaggaactcgagaaacat
gtgccaatgccttcagaagttgtggtagagtatgacaaagcagccagtttatggtccctc
catgaacaaataaaacaaatggaagcaacagttgaagaagctgcacagtcaagctctaga
agaagtaaatggcagttcatgggagctagagatgcaggagccaaggaagagcttcaccaa
gtttatggtgtatctgaaagaacagaaagtgatggagctgctaatttgatacaaaagttg
agggctgttaattatgcactgggtgaactgggccaatggtgtgcttataaggttgcacaa
tcttttctgacggctttgcaaaatgatgagagggcaaactaccagcttgatgtcaagttt
caagaatcttacctaaacaaagttgtttctctcttacaatgccaattatcagagggagct
gttactgaaaaagacatgaataatgcagaagcagagaactgtaatgctcaagatgggacc
aatactgatgagattgaggaaggagagctccctgacagtcatgttgtctctggtggagag
catgtggatgtgataattggagcggctgtagcagatggaaaagtgaccccgaaagtacag
tcattgattaaaatacttctgaagtatcagcacacagaggattttcgagcaatcatcttt
gttgagcgagttgtggctgctttagttcttcctaaggtttttgcagagcttccgtctctg
agtttcatcaggtgtgcaagtttaattgggcacaacaatagtcaagaaatgcggactgga
caaatgcaggatacaattgctaaattccgtgatggtcgtgtgacattgttagttgcaact
agtgttgctgaggaaggattggatattcggcaatgcaatgttgtcattcgatttgatctt
gcaaaaactgttttggcatacattcagtctagaggtcgtgcaaggaagcctgggtcagat
tacatcttgatggttgagagaggaaatttatcgcatgctacattcctaaggaatgctagg
aatagtgaggagaccttgcggaaagaagcaattgagagaactgaccttagtcatttgaag
gatacttcgaggttgatttcggtggatatggtaccaggtacggtgtaccaggttgaatca
actggtgccattgttagcttgaattctgctgttggactcgtccatttttactgctctcag
cttcctagtgacagatattcaatacttcgtcccgagtttattatgaagaagcatgagaag
ccagggggtccaactgaatattcttgcaagcttcagctcccctgtaatgcaccatttgaa
gagctcgagggtcccatgtgcagttctatgcgtcttgcccagcaggctgtatgtttggct
gcttgcaagaagctccatgagatgggagcatttactgatatgctcttgcccgataaagga
agcggggaagaagcagagaaggttgaccagaatgatgaaggagacccacttcctggaact
gctaggcatagagaattctatccagaaggtgtagcagatatactccagggagaatggatt
ttatctggaagagattgtgttggtgactccaaaatacatcgtctgtacatgtatactatc
aaatgtgtaaataatggctcttcaaaagatccattcttaactaaagtctcagattttgca
gtactttttggcaaagagctggatgcagaggtgttatcgatgtcggtggatctatttatc
gttcgagccatgataacaaaggcatctcttgtcttcaggggatcaatagatataactgaa
agtcagatggcatcccttaaaaattttcacgtaagattgatgagcattgtattggatgtg
gatgttgatcctgccactactccttgggatcctgccaaggcatatttgtttgtccctgtg
gttggcgataagtttgtagatcctataaaagaagttgattgggatttggtagataatata
atcactacaaatgcgtggagcaatcccnttcagagagctaggccagatgttttccttggg
acaaatgagaggacacttggtggtgacagaagggagtatggatttgggaaattgcgtcat
ggcctggcttttgggcacaaacctcatcctacttatggtatcagaggagccgtagcccca
tttgatgttgttaaagctaccggggtggttcctagtcgtgatacgattgaggtacaaggg
gattggaccaaaggcaatttgataatggctgatggtgttgcacgtgcagaagatcttgtt
ggaagaataataacagccgctcattcggggaagaggttttatgtagatacaatatgctat
gacatgtcagcagagacctcctttccaaggaaagagggctatcttggtcctgtcgagtac
agctcatatgccgattactataagctgaagtatggtgttgagttgagctacaagcaacaa
gctttgataagaggtcgtggtgtttcatactgcaagaatctcttatctcctcgatttgag
cactcagaaggtgaatcggaggaggcacttgacaaaacatactacgtgtttcttccgcct
gagctatgttttgttcatccacttcctggatcacttgttagaggtgcccagaggttgccc
tctattatgaggagggttgagagcatgcttcttgcaattcaacttaagcacataatacaa
tttccggtccctgcttcaaagattttggaagctttgactgctgcttcgtgtcaggagaca
ttttgctatgaaagggctgagcttcttggggatgcttacttgaaatgggtagtcagtcgt
tttctgtttcttaaatatccacagaaacatgaaggtcaactgaccaggatgagacaacaa
atggtgagtaacatggtattgtatcaatatgcattaaataagggacttcaatcatacatc
caagcagatcgctttgcaccatctagatgggctgctcctggggtgttgccagtctttgat
gaggatacaaaagatggtgacatgtccttatttgatcaagaacatgcaactgctgatgtt
ttaccagtaaaagtacttggtgatgggtttgaagatgaggatatggaagatggtgagatt
gagagtgactcaagttcttatagagtcctctctagcaagaccttagcggatgtggttgaa
gcactgattggagtttattatgttgaaggtggcaagcatgcagctaaccacctcatgaaa
tggattgggatccaggtggagtctgatcctgatgatatggactctatagtgaagccatcg
aatgttccagaaagcatactcaggagtgtaaattttgaggccttagaaggtgcattgaac
atcgagtttaaaaatagggccttgttggtagaagctattactcatgcttcacgcccatca
tcgggagtatcctgctaccagcgtttggagtttgttggtgatgcagtcttggatcatctt
atcacaagacatttgttttttacatacaccaatttgcctccaggtcgcttgactgatttg
cgtgctgctgccgtaaacaatgaaaactttgcacgtgttgctgtaaagcatcagttgcac
gtgcatcttcggcatggatcaagtgcccttgagaaacagattcgggacttcgtgaaggaa
gttcaggatgagttattaaagccaggtttcaactcttttggattgggagattgcaaagca
ccgaaagttcttggagatattgttgaatccattgctggtgccatttttcttgacagtgga
cgtgacactgcagttgtctggagggtttttcaacctctgttgcatcccatggtgactcca
gagacattgccgatgcatcctgtccgggaactacaagaacgatgccagcaacaagctgaa
ggcttggaatacaaagccagtcgtagtggcaatttggccactgtggaggttttcattgat
ggggtccaggttggagttgctcagaatccccaaaagaagatggcacagaaactagctgca
aggaatgcacttgctgttctgaaggagaaagaaacagctgaagctaaggagaactgtgag
gagaatgggaaaaagaagaagaatggcaaccagacatttaccaggcaaacattgaatgat
atctgcctgcgtcgaaactggcctatgcccttctatcggtgtgtgaatgaagggggccct
gcccatgcaaagagatttacttttgctgtcaaggttaacaccactgacagggggtggacc
gatgaatgcataggtgagccaatgcctagtgttaagaaggccaaggactcggccgctgtg
cttctcttggaacttttaaacaaatggtattcatga

All links

Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (12)   
   Pfam (12)   
All databases (23)   

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