KEGG   Glycine max (soybean): 100500134
Entry
100500134         CDS       T01710                                 
Name
(RefSeq) small nuclear ribonucleoprotein family protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
gmx  Glycine max (soybean)
Pathway
gmx03018  RNA degradation
gmx03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gmx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100500134
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100500134
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gmx03019]
    100500134
   03041 Spliceosome [BR:gmx03041]
    100500134
Messenger RNA biogenesis [BR:gmx03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100500134
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     100500134
Spliceosome [BR:gmx03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    100500134
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 100500134
NCBI-ProteinID: NP_001339618
Position
10:complement(1644285..1646630)
AA seq 149 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRQPKGIGRGLDE
GGPKGQGGRGRGGPGGKPGGNRGGGRGRG
NT seq 450 nt   +upstreamnt  +downstreamnt
atgctgcccctttcccttctcaagactgcccaaggccaccctatgctagtggaactgaaa
aatggggagacttataacgggcacttggttaattgtgatacatggatgaacattcatctc
cgagaagtcatttgtacctctaaagatggagatagattttggcgtatgcccgagtgctac
attcgcggcaataccataaagtaccttcgggttcctgatgaggttattgacaaagtccag
gaagaaacaaagagccgcactgatcgcaaaccccctggtgtgggacgtggaagaggaaga
ggtagggaggatggtcctggtggacgtcaaccaaaaggaattgggcgtggccttgatgaa
ggtggacctaaaggacaaggaggacgaggtaggggtggtcccggtggaaagcctggtgga
aacagaggtggagggcgaggtagaggttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (8)   
   RefSeq(nuc) (2)   
   GenBank (3)   
   EMBL (3)   
Protein domain (2)   
   Pfam (2)   
All databases (30)   

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