KEGG   Gossypium raimondii: 105792601
Entry
105792601         CDS       T04129                                 
Name
(RefSeq) protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
gra  Gossypium raimondii
Pathway
gra03250  Viral life cycle - HIV-1
gra04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:gra00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    105792601
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    105792601
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:gra04131]
    105792601
   03400 DNA repair and recombination proteins [BR:gra03400]
    105792601
Membrane trafficking [BR:gra04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    105792601
DNA repair and recombination proteins [BR:gra03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    105792601
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_5 AAA_16 RuvB_N AAA_14 AAA_22 TIP49 DUF815 AAA_33 AAA_2 AAA_17 RNA_helicase IstB_IS21 NACHT AAA_24 AAA_18 AAA_25 Parvo_NS1 nSTAND3 AAA_28 Mg_chelatase AAA_7 USP8_dimer PhoH Torsin ResIII bpMoxR
Other DBs
NCBI-GeneID: 105792601
NCBI-ProteinID: XP_012476703
UniProt: A0A0D2LRQ0
Position
7:38598092..38603138
AA seq 437 aa
MYSNFKEQAIEYVKQAVQEDNAGNYSKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFT
EYLRRAEEIRTVLDEGGPGPATNGGAAVATRPKSKPKDGSGGGEGGDGEDPDQAKLRAGL
DSAIIREKPNIKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGK
SYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARDSAPSIIFIDEIDSLCG
QRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPL
PDLKARQHMFKVHLGDTPHNLTENDFESLAHRTDGFSGSDISVCVKDVLFEPVRKTQDAM
FFFKTPDDMWMPCGPKQPGAVQITMQELAAKGLAAQILPPPISRSDFDKVLARQRPTVSK
ADLEVHERFTNEFGEEG
NT seq 1314 nt   +upstreamnt  +downstreamnt
atgtatagcaatttcaaagaacaagcgatagagtatgtgaagcaggcggtccaagaagac
aatgctgggaactatagcaaagctttccctttatacatgaacgcgctcgagtatttcaag
acccatttgaaatacgagaagaaccccaaaatcagggaggctattacccagaaattcacc
gagtatttacgccgtgccgaggagatccgtaccgttctagatgaaggtgggcctggaccg
gctactaatgggggcgctgctgttgccactcgccccaaaagtaagcccaaggatggtagc
ggcggaggggaaggaggtgatggggaggatcccgatcaggctaagttgagagctgggctt
gattcggctattattagggaaaagcctaatattaagtggaatgatgtggctgggttagaa
agtgctaagcaggctttgcaagaagctgttattttgccagtcaaatttcctcaatttttt
actggaaagagaaggccatggagagcttttctgttgtatgggccacccgggaccggtaag
tcatacttggccaaggctgttgcaactgaagctgactctacattttttagtgtttcttca
tcagaccttgtctcaaagtggatgggggaaagcgaaaagctagtttcaaaccttttccag
atggctcgtgacagtgcaccatccatcatattcattgatgaaatagattccttgtgtgga
cagcgtggtgagggcaatgagagtgaagcatcaagacgtatcaaaactgaacttttggtg
cagatgcagggcgttggaaataatgatcagaaagtcctagtgcttgcagcaacaaatact
ccttacgcgcttgatcaggccatccgccggcgttttgataagcgtatttacatacctctt
ccagatttgaaggctcggcaacatatgttcaaagtgcatctgggtgatactcctcacaac
ttgactgaaaatgattttgaaagcttagctcatcggacggatgggttttcagggtcagac
atatctgtttgtgttaaggatgttctttttgaacctgttcgtaaaacccaagatgccatg
tttttcttcaagacacctgatgatatgtggatgccatgtggaccaaagcaaccaggtgct
gtccaaattactatgcaggaattggctgccaaaggacttgcggcacagatccttccacct
cctatttcaagatcagattttgacaaggtgcttgcaagacagaggccaacagtgagcaaa
gctgatcttgaggtccatgaaagatttacaaatgagttcggagaggaaggttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (30)   
   Pfam (30)   
All databases (43)   

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