KEGG   Geobacillus thermodenitrificans: GTNG_3010
Entry
GTNG_3010         CDS       T00496                                 
Name
(GenBank) RNA polymerase sigma-54 factor RpoN
  KO
K03092  RNA polymerase sigma-54 factor
Organism
gtn  Geobacillus thermodenitrificans
Pathway
gtn02020  Two-component system
gtn02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:gtn00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    GTNG_3010
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    GTNG_3010
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gtn03021]
    GTNG_3010
Transcription machinery [BR:gtn03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     GTNG_3010
SSDB
Motif
Pfam: Sigma54_CBD Sigma54_DBD Sigma54_AID HTH_Tnp_ISL3 HTH_AsnC-type Sigma70_r4 HTH_23 HTH_17 HTH_Tnp_4 HTH_Crp_2 Sigma70_r4_2 HTH_10 HTH_3 MarR_2 HTH_38 HTH_24 HTH_PafC HTH_28 HTH_IclR HTH_AraC HTH_32 LacI TetR_N HTH_21 AbiEi_4 TrmB Fe_dep_repress PCI Xre-like-HTH MarR Phage_CII
Other DBs
NCBI-ProteinID: ABO68355
UniProt: A4ISQ1
Position
complement(3107125..3108432)
AA seq 435 aa
MRAELWQEQRLQLSLTKELVQAIELLQYSALDLEAFLYEQSLENPFLEIRRGRMRRRTSR
TDKDRKQWLENISGRTETLAGHLLAQLPGLMLPAKEERMVRHLIAALDEDGYLRVPLAEL
AARFSVSEQEVERALRFVQSLDPPGVGARDLAECLLLQLERRPERDELAETIVRHHFVAF
AEKAWKTLAKQLGVSLGELQRVFELIRTLEPRPGIHYANETPHFIVPDLIVTRQADGGWI
VTYNDDIHPELGWNKEYERHIVAVGDRHAERFMKEKYRQFTWLAKSLEQRKQTLVHLMGI
IIDRQRSCFESGLSALKPMTMREVAEELGVHESTVSRAVRHKYVQTPFGMIELRRFFSSA
ATAGAGETASSVQVKAIIQTLISAEDRRAPLSDQQLADLLRDQHGIAISRRTVAKYREQL
RIPSSAKRKQYTSLP
NT seq 1308 nt   +upstreamnt  +downstreamnt
atgagggcggagttatggcaagagcagcggctgcagttgtcgctgacgaaggagcttgtg
caggcgattgaactgctgcaatattcggcacttgatttggaagcgtttttatacgaacag
tcgcttgaaaacccatttttagaaattcgccgcggtcggatgcggcggagaacaagccga
acggacaaagatcggaagcaatggctcgaaaatatcagcggtcggacggagacgcttgct
ggccacttgcttgcccaacttccgggattgatgctgccggcgaaggaagagcgcatggtt
cgtcatctgatcgctgcgctggatgaagatggctatttgcgcgtaccgcttgccgagttg
gcagcgcgattctccgtatcggagcaagaggtcgaacgtgcgctgcgttttgtgcaatcg
cttgacccaccgggagtcggtgcgcgtgatttggccgagtgtctccttctgcagcttgag
cgccggccggagcgcgatgagttggcggagacgatcgttcgccatcattttgtcgccttt
gccgaaaaagcgtggaagacgcttgcgaaacaactcggcgtcagcctcggtgagctgcag
cgtgtcttcgagctcatccgcacgcttgagccgcggcccggtatccattatgcgaacgaa
acgccgcattttatcgtgcccgatttgatcgtcacccgccaagcggacggcggttggatt
gttacctataacgatgacatccatccggagctcgggtggaataaggaatacgagcggcat
attgttgccgttggcgatcggcacgctgagcgatttatgaaagaaaagtatcggcagttt
acatggctcgccaaaagtttagaacaacggaagcagacgctagttcacctcatgggcatc
attattgaccgccagcgctcttgttttgaaagcggcctgtcggcgctgaagccgatgacg
atgcgcgaagtggccgaagaactcggcgtccatgaatcaactgtgagccgtgcggtccgg
cataaatatgtgcaaacgccgtttggcatgatcgagctgcgtcgctttttttccagtgct
gccacggctggagcgggggagacggcttcctctgttcaagtgaaagcgatcattcaaacg
ctcatttccgccgaagaccggcgggcgccgctttccgaccaacagcttgccgatttgctt
cgcgatcagcatggcattgccatctcacgacgcacggtcgccaaatatcgcgaacagctg
cgcattccgtcatcagccaaacgaaaacaatatacgagcctgccgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (31)   
   Pfam (31)   
All databases (40)   

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