KEGG   Helicobacter cinaedi CCUG 18818 = ATCC BAA-847: HCBAA847_0343
Entry
HCBAA847_0343     CDS       T02494                                 
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
hcb  Helicobacter cinaedi CCUG 18818 = ATCC BAA-847
Pathway
hcb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hcb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HCBAA847_0343 (pnp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hcb03019]
    HCBAA847_0343 (pnp)
   03016 Transfer RNA biogenesis [BR:hcb03016]
    HCBAA847_0343 (pnp)
Enzymes [BR:hcb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     HCBAA847_0343 (pnp)
Messenger RNA biogenesis [BR:hcb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     HCBAA847_0343 (pnp)
Transfer RNA biogenesis [BR:hcb03016]
 Prokaryotic type
  tRNA degradation factors
   HCBAA847_0343 (pnp)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 KH_1 PNPase
Other DBs
NCBI-ProteinID: BAM31592
UniProt: I7HC55
Position
334669..336783
AA seq 704 aa
MQRIDIQNENLNESYTFNYMAKAANGSVLYQNGGSVLLASVCAEENNKYDDDFLPLSVQY
IEKAYASNKFPPGFVKREGKPSEFEILTSRLIDRTLRPLFPKGYKHITSIVIWVLSYDGK
SDLQLNALNAASAALYVSNLPLESLKDNAVCGVRIGRKNGAFVLNPTMEQMSESELDLFV
SGRGDELLMIEMKSIRSEKGANELSERDMILALESAKSYIDRATQSYHKYFAPYKKQSLA
IDLSQDSLNTDLLEKIAKNYHSQILEAITFLAKSESQMQLHSIIKQAMRECGIEEEKIAT
EHIKAYKKKLVREMIIESAIRADGRGLKDIRPISIETNILPFAHGSVLFTRGQTQALVSA
TLGSENDAQSYEMLGSKNALKRRFLFHYNFPGFSVGEASMIGSVGRRELGHGNLARRALE
SSLTSQDRTIRLVSEILESNGSSSMASVCGGSLALCACGVQVDSLIAGVAMGLVTQGEKY
AILTDISGLEDHDGDMDFKVAGGYKGISAMQMDIKLGGISKEILEESLLQAKEAREQILG
IMEEARAKIVLNHSILPKSESFKIAPHKIVEVIGQGGRVIKDIIERFEVSIDLERESGIV
NVSASNEDNLAKAKAFILEIVSGAKSDRVDWESYHVGERFVGKIKKIADFGVFVELPRGG
DGLLHISKIIKDKNESIHSVLQGKSELECEILSRNKGKVELGLV
NT seq 2115 nt   +upstreamnt  +downstreamnt
atgcaacgcattgatatacaaaatgagaatctaaatgagagctatacttttaactatatg
gcaaaggcagcaaatggcagtgtgctgtatcaaaacggcggaagtgtgctactagcaagt
gtgtgtgcggaagagaataacaaatatgatgatgactttttgcccttaagtgtgcaatac
attgaaaaagcctatgcgagtaataaattcccccccggttttgtgaagcgagagggcaaa
cctagtgaatttgagattctcacttctaggctcattgataggacattgcgtccgcttttt
cccaaaggctataagcatattacttcaattgttatttgggtgctaagctatgatggcaag
agtgatttgcagctcaatgcacttaatgccgcatcggcagctttatatgtctcaaacctg
cctttagagagtttaaaagacaatgcggtgtgtggggtaagaatcgggcgtaaaaatgga
gcgtttgtattaaatcccacaatggagcagatgagtgaaagcgagcttgatttgtttgtg
tccggcaggggtgatgagctattaatgattgaaatgaaaagtattaggagtgaaaaaggg
gcaaatgaacttagtgaaagggatatgatacttgctttagaatctgctaaaagttatata
gacagggcgacacagagctatcacaaatattttgccccttataaaaagcaaagccttgcg
attgatttaagtcaagattcacttaacactgatttattagaaaaaattgctaaaaactac
catagccaaattttagaagccatcacatttttagctaaatcagaatctcaaatgcagctt
cattccattatcaaacaggcaatgcgtgagtgtggcattgaagaagagaaaatcgccaca
gagcatattaaggcgtataagaaaaagcttgtgcgtgagatgattatagaatctgctatt
agggctgatggcaggggcttaaaggatattcgccctatcagtatagagacaaatattctg
ccctttgctcacggcagtgtgcttttcacacgcgggcaaactcaagcccttgtgagtgcg
acacttggcagtgagaatgacgcacaaagctatgagatgttaggtagtaagaatgcgtta
aaacggcgatttttattccattataatttccccggattcagcgttggcgaagcaagtatg
ataggcagtgtagggcgtagagagctaggacacggcaatcttgctagacgcgctttagaa
tctagccttacttcgcaggataggacaatccgcttagtgtcagagattttagaatctaat
ggctcaagctcaatggcgagtgtgtgcggcggatctttggcattatgtgcgtgtggggtt
caggtagattctcttatagcgggggtggctatggggctagtaacacagggggagaaatac
gctatactcacagatattagtggtttagaagatcacgatggtgatatggattttaaggtt
gctggtggatataagggcataagtgcaatgcaaatggatattaagcttggtggcatttca
aaagagattttagaagaatctttactgcaagcaaaggaagcaagggagcagattctaggc
attatggaggaagctagggcaaagattgtgctaaatcattctatcttgccaaagagtgaa
agttttaagattgccccacataagattgttgaagtgatcgggcaaggtgggcgtgtgata
aaggatattattgagcgatttgaagtgagtattgatttggagcgtgaaagcggaatagtg
aatgtgagtgcaagtaatgaagataatcttgctaaagccaaggcttttatcctagagatt
gtaagtggagctaaaagtgatagggtagattgggagagttatcatgtgggtgagcgattt
gttgggaagataaagaaaattgcggattttggggtatttgtggagctgccgcgtggtggt
gatgggctattgcatatcagcaaaattattaaagataagaatgaaagcattcatagtgtg
ttgcaaggcaaaagtgagttagagtgcgagattctctcccgcaataagggcaaggtggag
ttaggcttagtttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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